Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm12892-201ENSMUST00000117367 1146 ntBASIC18.77■□□□□ 0.59
Col3a1P08121 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC18.77■□□□□ 0.59
Col3a1P08121 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col3a1P08121 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC18.76■□□□□ 0.59
Col3a1P08121 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.76■□□□□ 0.59
Col3a1P08121 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.76■□□□□ 0.59
Col3a1P08121 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC18.76■□□□□ 0.59
Col3a1P08121 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Thap2-203ENSMUST00000218989 527 ntBASIC18.76■□□□□ 0.59
Col3a1P08121 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col3a1P08121 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
Col3a1P08121 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col3a1P08121 AC157650.3-201ENSMUST00000225058 1476 ntBASIC18.75■□□□□ 0.59
Col3a1P08121 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Col3a1P08121 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col3a1P08121 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Gm26308-201ENSMUST00000157768 69 ntBASIC18.75■□□□□ 0.59
Col3a1P08121 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Ntrk2-205ENSMUST00000224402 2284 ntBASIC18.75■□□□□ 0.59
Col3a1P08121 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Syf2-201ENSMUST00000030622 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Col3a1P08121 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col3a1P08121 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.74■□□□□ 0.59
Col3a1P08121 Gm19430-201ENSMUST00000193847 2137 ntBASIC18.74■□□□□ 0.59
Col3a1P08121 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col3a1P08121 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC18.74■□□□□ 0.59
Col3a1P08121 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Col3a1P08121 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Col3a1P08121 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC18.74■□□□□ 0.59
Col3a1P08121 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC18.74■□□□□ 0.59
Col3a1P08121 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC18.74■□□□□ 0.59
Col3a1P08121 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col3a1P08121 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Col3a1P08121 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC18.73■□□□□ 0.59
Col3a1P08121 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC18.73■□□□□ 0.59
Col3a1P08121 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC18.73■□□□□ 0.59
Col3a1P08121 Gm11453-201ENSMUST00000117318 1007 ntBASIC18.73■□□□□ 0.59
Col3a1P08121 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC18.73■□□□□ 0.59
Col3a1P08121 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Col3a1P08121 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC18.73■□□□□ 0.59
Col3a1P08121 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Col3a1P08121 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.73■□□□□ 0.59
Col3a1P08121 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Col3a1P08121 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Col3a1P08121 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC18.72■□□□□ 0.59
Col3a1P08121 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col3a1P08121 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms