Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Cops4O88544 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC14.64□□□□□ -0.07
Cops4O88544 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Cops4O88544 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Cops4O88544 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.64□□□□□ -0.07
Cops4O88544 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC14.64□□□□□ -0.07
Cops4O88544 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cops4O88544 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC14.63□□□□□ -0.07
Cops4O88544 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Cops4O88544 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.63□□□□□ -0.07
Cops4O88544 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Cops4O88544 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC14.63□□□□□ -0.07
Cops4O88544 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC14.63□□□□□ -0.07
Cops4O88544 Mir5122-201ENSMUST00000175004 89 ntBASIC14.63□□□□□ -0.07
Cops4O88544 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC14.63□□□□□ -0.07
Cops4O88544 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC14.63□□□□□ -0.07
Cops4O88544 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC14.63□□□□□ -0.07
Cops4O88544 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Cops4O88544 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cops4O88544 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Gm43352-201ENSMUST00000196419 3065 ntBASIC14.62□□□□□ -0.07
Cops4O88544 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC14.62□□□□□ -0.07
Cops4O88544 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC14.62□□□□□ -0.07
Cops4O88544 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC14.62□□□□□ -0.07
Cops4O88544 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC14.62□□□□□ -0.07
Cops4O88544 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Cops4O88544 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC14.62□□□□□ -0.07
Cops4O88544 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC14.62□□□□□ -0.07
Cops4O88544 Slc35b2-202ENSMUST00000223987 1766 ntBASIC14.62□□□□□ -0.07
Cops4O88544 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Cops4O88544 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cops4O88544 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cops4O88544 AC174678.1-201ENSMUST00000228007 2749 ntBASIC14.61□□□□□ -0.07
Cops4O88544 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cops4O88544 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Cops4O88544 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Cops4O88544 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cops4O88544 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cops4O88544 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Cops4O88544 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.61□□□□□ -0.07
Cops4O88544 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms