Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Chd3B1AR17 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Chd3B1AR17 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Chd3B1AR17 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
Chd3B1AR17 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Gm14494-201ENSMUST00000118786 435 ntBASIC15.45■□□□□ 0.06
Chd3B1AR17 Gm15467-201ENSMUST00000120582 445 ntBASIC15.45■□□□□ 0.06
Chd3B1AR17 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC15.45■□□□□ 0.06
Chd3B1AR17 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Gm10175-201ENSMUST00000086013 645 ntBASIC15.45■□□□□ 0.06
Chd3B1AR17 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Chd3B1AR17 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
Chd3B1AR17 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Gm15358-201ENSMUST00000119249 520 ntBASIC15.44■□□□□ 0.06
Chd3B1AR17 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
Chd3B1AR17 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Chd3B1AR17 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
Chd3B1AR17 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Chd3B1AR17 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
Chd3B1AR17 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms