Protein–RNA interactions for Protein: A2APX8

Scn1a, Sodium channel protein type 1 subunit alpha, mousemouse

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1aA2APX8 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Scn1aA2APX8 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Scn1aA2APX8 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Best4-ps-201ENSMUST00000129783 1380 ntBASIC16.51■□□□□ 0.23
Scn1aA2APX8 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC16.51■□□□□ 0.23
Scn1aA2APX8 Gm12260-201ENSMUST00000122447 411 ntBASIC16.51■□□□□ 0.23
Scn1aA2APX8 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 AC160980.1-201ENSMUST00000224136 970 ntBASIC16.51■□□□□ 0.23
Scn1aA2APX8 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Fam241b-204ENSMUST00000125704 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Scn1aA2APX8 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Scn1aA2APX8 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm14722-201ENSMUST00000118943 689 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm9727-201ENSMUST00000161387 555 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 AC122024.2-201ENSMUST00000220086 871 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm45412-201ENSMUST00000210217 2275 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Gm45167-201ENSMUST00000208007 322 ntBASIC16.5■□□□□ 0.23
Scn1aA2APX8 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Scn1aA2APX8 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Scn1aA2APX8 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Gm13597-201ENSMUST00000121239 375 ntBASIC16.48■□□□□ 0.23
Scn1aA2APX8 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.48■□□□□ 0.23
Scn1aA2APX8 Gm5264-201ENSMUST00000190584 848 ntBASIC16.48■□□□□ 0.23
Scn1aA2APX8 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Scn1aA2APX8 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms