Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Cpsf1Q9EPU4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 AC151836.1-202ENSMUST00000226259 753 ntBASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC21.76■■□□□ 1.07
Cpsf1Q9EPU4 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 AC225888.1-201ENSMUST00000227184 728 ntBASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Cpsf1Q9EPU4 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cpsf1Q9EPU4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Mir3113-201ENSMUST00000175478 76 ntBASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Gm2213-201ENSMUST00000197485 688 ntBASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Gm7787-201ENSMUST00000216858 688 ntBASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Cpsf1Q9EPU4 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 AC157650.3-201ENSMUST00000225058 1476 ntBASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Gm7229-201ENSMUST00000214719 1007 ntBASIC21.72■■□□□ 1.07
Cpsf1Q9EPU4 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Gm24513-201ENSMUST00000174964 138 ntBASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cpsf1Q9EPU4 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Gm5184-201ENSMUST00000220417 1702 ntBASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Cpsf1Q9EPU4 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC21.7■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms