Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Mzt1-203ENSMUST00000227948 952 ntBASIC18.71■□□□□ 0.59
Nup88Q8CEC0 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup88Q8CEC0 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup88Q8CEC0 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Nup88Q8CEC0 Ccdc166-201ENSMUST00000182172 2584 ntBASIC18.71■□□□□ 0.59
Nup88Q8CEC0 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Nup88Q8CEC0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Slc35b2-202ENSMUST00000223987 1766 ntBASIC18.7■□□□□ 0.58
Nup88Q8CEC0 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Nup88Q8CEC0 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Gm28659-201ENSMUST00000188013 759 ntBASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Gm9867-201ENSMUST00000192212 2647 ntBASIC18.69■□□□□ 0.58
Nup88Q8CEC0 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Nup88Q8CEC0 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Nup88Q8CEC0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Nup88Q8CEC0 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms