Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Ccdc40Q8BI79 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Fam160b1-201ENSMUST00000036407 5630 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Gm5587-201ENSMUST00000206270 674 ntBASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Ccdc40Q8BI79 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Mir770-201ENSMUST00000103252 94 ntBASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Gm10052-201ENSMUST00000168019 960 ntBASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Gm7729-201ENSMUST00000050143 801 ntBASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.55■□□□□ 0.24
Ccdc40Q8BI79 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 AC093043.3-201ENSMUST00000226531 2273 ntBASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Gm13836-201ENSMUST00000121159 501 ntBASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Ccdc40Q8BI79 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Ccdc40Q8BI79 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms