Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gm27920-201ENSMUST00000183953 96 ntBASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Gm9899-201ENSMUST00000065519 555 ntBASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Col27a1Q5QNQ9 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Gm22189-201ENSMUST00000103822 86 ntBASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col27a1Q5QNQ9 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Grk6-207ENSMUST00000225925 2769 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm12859-201ENSMUST00000117834 427 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm14928-201ENSMUST00000120198 477 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm27533-201ENSMUST00000183800 152 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Gm11841-201ENSMUST00000117060 1963 ntBASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col27a1Q5QNQ9 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Gm6218-201ENSMUST00000219812 628 ntBASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col27a1Q5QNQ9 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Mir7085-201ENSMUST00000184353 66 ntBASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm8515-201ENSMUST00000194852 576 ntBASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm44344-201ENSMUST00000200287 129 ntBASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm45384-201ENSMUST00000210451 277 ntBASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col27a1Q5QNQ9 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms