Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 AC131710.1-201ENSMUST00000228336 990 ntBASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddb1Q3U1J4 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddb1Q3U1J4 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
Ddb1Q3U1J4 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddb1Q3U1J4 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Gm25287-201ENSMUST00000103846 110 ntBASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Gm22918-201ENSMUST00000103855 110 ntBASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Gm5779-201ENSMUST00000218467 910 ntBASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
Ddb1Q3U1J4 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Wnt10b-206ENSMUST00000228546 2709 ntBASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Gm12151-201ENSMUST00000121374 290 ntBASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 CT025555.1-201ENSMUST00000225901 1217 ntBASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddb1Q3U1J4 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Gm12017-201ENSMUST00000122453 1003 ntBASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 H2-Pa-201ENSMUST00000182803 626 ntBASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 Gm5184-201ENSMUST00000220417 1702 ntBASIC20.05■□□□□ 0.8
Ddb1Q3U1J4 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Gm11453-201ENSMUST00000117318 1007 ntBASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Hist1h2al-201ENSMUST00000091708 339 ntBASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddb1Q3U1J4 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ddb1Q3U1J4 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms