Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Rfx1P48377 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 BC037039-201ENSMUST00000192003 2205 ntBASIC18.99■□□□□ 0.63
Rfx1P48377 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.99■□□□□ 0.63
Rfx1P48377 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Rfx1P48377 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Rfx1P48377 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Rfx1P48377 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
Rfx1P48377 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Gm29707-201ENSMUST00000196325 491 ntBASIC18.98■□□□□ 0.63
Rfx1P48377 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Slc43a3-201ENSMUST00000090726 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC18.98■□□□□ 0.63
Rfx1P48377 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Rfx1P48377 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Rfx1P48377 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
Rfx1P48377 Wnt10b-206ENSMUST00000228546 2709 ntBASIC18.97■□□□□ 0.63
Rfx1P48377 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC18.97■□□□□ 0.63
Rfx1P48377 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Rfx1P48377 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC18.96■□□□□ 0.63
Rfx1P48377 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Rfx1P48377 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Rfx1P48377 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Rfx1P48377 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC18.96■□□□□ 0.63
Rfx1P48377 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm7213-201ENSMUST00000215977 950 ntBASIC18.96■□□□□ 0.63
Rfx1P48377 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Rfx1P48377 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Rfx1P48377 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC18.95■□□□□ 0.62
Rfx1P48377 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
Rfx1P48377 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Cdk2-201ENSMUST00000026415 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.95■□□□□ 0.62
Rfx1P48377 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Rfx1P48377 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.95■□□□□ 0.62
Rfx1P48377 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC18.95■□□□□ 0.62
Rfx1P48377 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Rfx1P48377 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms