Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC13.19□□□□□ -0.3
Hmgb3O54879 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Gm37292-201ENSMUST00000192062 758 ntBASIC13.19□□□□□ -0.3
Hmgb3O54879 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Hmgb3O54879 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Gm37812-201ENSMUST00000195216 2475 ntBASIC13.18□□□□□ -0.3
Hmgb3O54879 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Gm42473-201ENSMUST00000201056 2291 ntBASIC13.18□□□□□ -0.3
Hmgb3O54879 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Pcgf5-211ENSMUST00000225920 6443 ntBASIC13.18□□□□□ -0.3
Hmgb3O54879 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Gm37025-201ENSMUST00000195159 829 ntBASIC13.18□□□□□ -0.3
Hmgb3O54879 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Hmgb3O54879 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Hmgb3O54879 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC13.17□□□□□ -0.3
Hmgb3O54879 Fam110a-201ENSMUST00000062047 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC13.17□□□□□ -0.3
Hmgb3O54879 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Gm13158-201ENSMUST00000122007 736 ntBASIC13.17□□□□□ -0.3
Hmgb3O54879 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Hmgb3O54879 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC13.17□□□□□ -0.3
Hmgb3O54879 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Hmgb3O54879 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Hmgb3O54879 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms