Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 AC127302.2-201ENSMUST00000215212 268 ntBASIC21.74■■□□□ 1.07
Usp40Q8BWR4 AC158538.2-201ENSMUST00000225455 906 ntBASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Usp40Q8BWR4 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Usp40Q8BWR4 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Gm38318-201ENSMUST00000195769 1706 ntBASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Usp40Q8BWR4 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Gm13597-201ENSMUST00000121239 375 ntBASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC21.71■■□□□ 1.07
Usp40Q8BWR4 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 AC159295.1-201ENSMUST00000225326 940 ntBASIC21.71■■□□□ 1.07
Usp40Q8BWR4 AC151836.1-202ENSMUST00000226259 753 ntBASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Usp40Q8BWR4 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ndufaf2-202ENSMUST00000223734 556 ntBASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Usp40Q8BWR4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Usp40Q8BWR4 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms