Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC13.06□□□□□ -0.32
Col7a1Q63870 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col7a1Q63870 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col7a1Q63870 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col7a1Q63870 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.06□□□□□ -0.32
Col7a1Q63870 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col7a1Q63870 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Col7a1Q63870 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col7a1Q63870 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC13.05□□□□□ -0.32
Col7a1Q63870 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Col7a1Q63870 Gm18049-201ENSMUST00000208909 581 ntBASIC13.05□□□□□ -0.32
Col7a1Q63870 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col7a1Q63870 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Gm6263-201ENSMUST00000120029 1342 ntBASIC13.04□□□□□ -0.32
Col7a1Q63870 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Col7a1Q63870 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC13.04□□□□□ -0.32
Col7a1Q63870 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC13.04□□□□□ -0.32
Col7a1Q63870 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC13.04□□□□□ -0.32
Col7a1Q63870 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Col7a1Q63870 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Col7a1Q63870 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Gm42693-201ENSMUST00000196779 631 ntBASIC13.03□□□□□ -0.32
Col7a1Q63870 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Hmgb1-202ENSMUST00000093196 1092 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Gm6539-201ENSMUST00000119157 1064 ntBASIC13.03□□□□□ -0.32
Col7a1Q63870 Flt3l-201ENSMUST00000146760 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Gm8116-201ENSMUST00000182917 1201 ntBASIC13.03□□□□□ -0.32
Col7a1Q63870 Gm43703-201ENSMUST00000200523 763 ntBASIC13.03□□□□□ -0.32
Col7a1Q63870 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col7a1Q63870 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col7a1Q63870 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.02□□□□□ -0.32
Col7a1Q63870 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Col7a1Q63870 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC13.02□□□□□ -0.32
Col7a1Q63870 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col7a1Q63870 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col7a1Q63870 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC13.02□□□□□ -0.32
Col7a1Q63870 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col7a1Q63870 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC13.02□□□□□ -0.33
Col7a1Q63870 Gm8062-201ENSMUST00000139696 444 ntBASIC13.02□□□□□ -0.33
Col7a1Q63870 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col7a1Q63870 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col7a1Q63870 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
Col7a1Q63870 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col7a1Q63870 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col7a1Q63870 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col7a1Q63870 Gm15236-201ENSMUST00000117309 379 ntBASIC13.02□□□□□ -0.33
Col7a1Q63870 Mir1982-201ENSMUST00000157368 74 ntBASIC13.02□□□□□ -0.33
Col7a1Q63870 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms