Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Trim27Q62158 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
Trim27Q62158 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Trim27Q62158 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim27Q62158 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trim27Q62158 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.51■□□□□ 0.71
Trim27Q62158 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC19.51■□□□□ 0.71
Trim27Q62158 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Trim27Q62158 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC19.5■□□□□ 0.71
Trim27Q62158 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Trim27Q62158 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC19.5■□□□□ 0.71
Trim27Q62158 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Trim27Q62158 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
Trim27Q62158 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
Trim27Q62158 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trim27Q62158 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trim27Q62158 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 Gm7367-201ENSMUST00000057611 492 ntBASIC19.49■□□□□ 0.71
Trim27Q62158 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
Trim27Q62158 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trim27Q62158 CT010478.1-201ENSMUST00000220747 2787 ntBASIC19.49■□□□□ 0.71
Trim27Q62158 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC19.49■□□□□ 0.71
Trim27Q62158 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trim27Q62158 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim27Q62158 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Trim27Q62158 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.48■□□□□ 0.71
Trim27Q62158 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim27Q62158 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Gm7506-201ENSMUST00000207758 815 ntBASIC19.48■□□□□ 0.71
Trim27Q62158 Gm9172-201ENSMUST00000212092 954 ntBASIC19.48■□□□□ 0.71
Trim27Q62158 AC108846.1-201ENSMUST00000214531 513 ntBASIC19.48■□□□□ 0.71
Trim27Q62158 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Trim27Q62158 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim27Q62158 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim27Q62158 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trim27Q62158 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trim27Q62158 Tm9sf1-203ENSMUST00000121791 2148 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Trim27Q62158 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
Trim27Q62158 Gm18669-201ENSMUST00000216049 778 ntBASIC19.47■□□□□ 0.71
Trim27Q62158 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim27Q62158 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim27Q62158 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC19.47■□□□□ 0.71
Trim27Q62158 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim27Q62158 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Trim27Q62158 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim27Q62158 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms