Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CtcfQ61164 Dock1-206ENSMUST00000211593 2589 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CtcfQ61164 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.39
CtcfQ61164 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CtcfQ61164 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CtcfQ61164 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CtcfQ61164 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CtcfQ61164 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CtcfQ61164 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CtcfQ61164 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CtcfQ61164 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Gm8668-201ENSMUST00000120559 1447 ntBASIC17.51■□□□□ 0.39
CtcfQ61164 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.51■□□□□ 0.39
CtcfQ61164 Gm18959-201ENSMUST00000208954 655 ntBASIC17.51■□□□□ 0.39
CtcfQ61164 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CtcfQ61164 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CtcfQ61164 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Dctd-203ENSMUST00000170263 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Tfap2d-201ENSMUST00000037294 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CtcfQ61164 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CtcfQ61164 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CtcfQ61164 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Gm13474-201ENSMUST00000122466 815 ntBASIC17.5■□□□□ 0.39
CtcfQ61164 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CtcfQ61164 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Gm36967-201ENSMUST00000193814 266 ntBASIC17.5■□□□□ 0.39
CtcfQ61164 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
CtcfQ61164 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.5■□□□□ 0.39
CtcfQ61164 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC17.5■□□□□ 0.39
CtcfQ61164 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC17.5■□□□□ 0.39
CtcfQ61164 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CtcfQ61164 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CtcfQ61164 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CtcfQ61164 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.49■□□□□ 0.39
CtcfQ61164 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.49■□□□□ 0.39
CtcfQ61164 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CtcfQ61164 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
CtcfQ61164 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CtcfQ61164 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
CtcfQ61164 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CtcfQ61164 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CtcfQ61164 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms