Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 AC140375.2-201ENSMUST00000225283 584 ntBASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.18■□□□□ 0.5
Ccdc88aQ5SNZ0 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm8825-201ENSMUST00000182565 998 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm4518-201ENSMUST00000182638 718 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm20949-201ENSMUST00000206478 952 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc88aQ5SNZ0 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm27494-201ENSMUST00000184735 189 ntBASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc88aQ5SNZ0 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm11424-201ENSMUST00000121929 829 ntBASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc88aQ5SNZ0 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc88aQ5SNZ0 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc88aQ5SNZ0 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC18.14■□□□□ 0.5
Ccdc88aQ5SNZ0 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ccdc88aQ5SNZ0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc88aQ5SNZ0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc88aQ5SNZ0 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms