Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Limch1Q3UH68 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Limch1Q3UH68 AC133083.1-201ENSMUST00000221736 2209 ntBASIC18.68■□□□□ 0.58
Limch1Q3UH68 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Limch1Q3UH68 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Gm15372-201ENSMUST00000120729 834 ntBASIC18.66■□□□□ 0.58
Limch1Q3UH68 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Limch1Q3UH68 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC18.65■□□□□ 0.58
Limch1Q3UH68 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Inhbc-201ENSMUST00000026472 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Limch1Q3UH68 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Limch1Q3UH68 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.64■□□□□ 0.57
Limch1Q3UH68 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC18.64■□□□□ 0.57
Limch1Q3UH68 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 62 ms