Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.47■□□□□ 0.71
PTPN9P43378 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.47■□□□□ 0.71
PTPN9P43378 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.47■□□□□ 0.71
PTPN9P43378 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.47■□□□□ 0.71
PTPN9P43378 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.47■□□□□ 0.71
PTPN9P43378 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.47■□□□□ 0.71
PTPN9P43378 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.47■□□□□ 0.71
PTPN9P43378 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.47■□□□□ 0.71
PTPN9P43378 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 AL499627.1-201ENST00000569373 2188 ntBASIC19.47■□□□□ 0.71
PTPN9P43378 AC034236.2-201ENST00000606662 1610 ntBASIC19.47■□□□□ 0.71
PTPN9P43378 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PTPN9P43378 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 LINC01568-207ENST00000641790 1380 ntBASIC19.46■□□□□ 0.71
PTPN9P43378 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.46■□□□□ 0.71
PTPN9P43378 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.46■□□□□ 0.71
PTPN9P43378 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.46■□□□□ 0.71
PTPN9P43378 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.46■□□□□ 0.71
PTPN9P43378 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.46■□□□□ 0.71
PTPN9P43378 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.46■□□□□ 0.71
PTPN9P43378 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN9P43378 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN9P43378 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.46■□□□□ 0.71
PTPN9P43378 AC145285.6-201ENST00000604632 637 ntBASIC19.46■□□□□ 0.71
PTPN9P43378 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN9P43378 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PTPN9P43378 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN9P43378 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.46■□□□□ 0.71
PTPN9P43378 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
PTPN9P43378 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.45■□□□□ 0.7
PTPN9P43378 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PTPN9P43378 ECEL1P2-202ENST00000465689 757 ntBASIC19.45■□□□□ 0.7
PTPN9P43378 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.45■□□□□ 0.7
PTPN9P43378 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.45■□□□□ 0.7
PTPN9P43378 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.45■□□□□ 0.7
PTPN9P43378 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.45■□□□□ 0.7
PTPN9P43378 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
PTPN9P43378 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.45■□□□□ 0.7
PTPN9P43378 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PTPN9P43378 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.44■□□□□ 0.7
PTPN9P43378 AC073592.3-201ENST00000625118 1834 ntBASIC19.44■□□□□ 0.7
PTPN9P43378 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
PTPN9P43378 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PTPN9P43378 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
PTPN9P43378 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 HMGA1P5-201ENST00000412453 271 ntBASIC19.44■□□□□ 0.7
PTPN9P43378 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.44■□□□□ 0.7
PTPN9P43378 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
PTPN9P43378 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.44■□□□□ 0.7
PTPN9P43378 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 AC073912.3-201ENST00000624414 853 ntBASIC19.44■□□□□ 0.7
PTPN9P43378 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.44■□□□□ 0.7
PTPN9P43378 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
PTPN9P43378 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.44■□□□□ 0.7
PTPN9P43378 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 KRT18P22-201ENST00000402024 1347 ntBASIC19.44■□□□□ 0.7
PTPN9P43378 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.44■□□□□ 0.7
PTPN9P43378 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PTPN9P43378 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms