Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Gm11780-201ENSMUST00000136880 516 ntBASIC18.35■□□□□ 0.53
Traf1P39428 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.35■□□□□ 0.53
Traf1P39428 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
Traf1P39428 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.35■□□□□ 0.53
Traf1P39428 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
Traf1P39428 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Traf1P39428 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.35■□□□□ 0.53
Traf1P39428 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Traf1P39428 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Traf1P39428 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
Traf1P39428 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Traf1P39428 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC18.34■□□□□ 0.53
Traf1P39428 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Traf1P39428 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Traf1P39428 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Traf1P39428 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Traf1P39428 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Traf1P39428 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Traf1P39428 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Traf1P39428 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Traf1P39428 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.53
Traf1P39428 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.33■□□□□ 0.52
Traf1P39428 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC18.33■□□□□ 0.52
Traf1P39428 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Traf1P39428 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.33■□□□□ 0.52
Traf1P39428 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.33■□□□□ 0.52
Traf1P39428 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm8825-201ENSMUST00000182565 998 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm4518-201ENSMUST00000182638 718 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC18.33■□□□□ 0.52
Traf1P39428 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.33■□□□□ 0.52
Traf1P39428 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Traf1P39428 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.32■□□□□ 0.52
Traf1P39428 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.32■□□□□ 0.52
Traf1P39428 AV026068-213ENSMUST00000223675 1171 ntBASIC18.32■□□□□ 0.52
Traf1P39428 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Traf1P39428 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Traf1P39428 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms