Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Lmx1bO88609 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Lmx1bO88609 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.38□□□□□ -0.11
Lmx1bO88609 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC14.38□□□□□ -0.11
Lmx1bO88609 Gm2651-201ENSMUST00000203560 838 ntBASIC14.38□□□□□ -0.11
Lmx1bO88609 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.38□□□□□ -0.11
Lmx1bO88609 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Lmx1bO88609 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Lmx1bO88609 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Mir5131-201ENSMUST00000175426 93 ntBASIC14.37□□□□□ -0.11
Lmx1bO88609 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gm43514-201ENSMUST00000198852 424 ntBASIC14.37□□□□□ -0.11
Lmx1bO88609 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Lmx1bO88609 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Lmx1bO88609 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Lmx1bO88609 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Lmx1bO88609 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.36□□□□□ -0.11
Lmx1bO88609 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC14.36□□□□□ -0.11
Lmx1bO88609 Gm9449-201ENSMUST00000207265 1011 ntBASIC14.36□□□□□ -0.11
Lmx1bO88609 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Lmx1bO88609 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms