Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Chd3B1AR17 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Chd3B1AR17 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
Chd3B1AR17 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 AC132104.2-201ENSMUST00000215011 266 ntBASIC15.52■□□□□ 0.08
Chd3B1AR17 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Chd3B1AR17 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Chd3B1AR17 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Chd3B1AR17 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chd3B1AR17 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Chd3B1AR17 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Chd3B1AR17 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC15.52■□□□□ 0.07
Chd3B1AR17 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chd3B1AR17 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Chd3B1AR17 Gm12260-201ENSMUST00000122447 411 ntBASIC15.52■□□□□ 0.07
Chd3B1AR17 Gm9727-201ENSMUST00000161387 555 ntBASIC15.52■□□□□ 0.07
Chd3B1AR17 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC15.52■□□□□ 0.07
Chd3B1AR17 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC15.52■□□□□ 0.07
Chd3B1AR17 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Chd3B1AR17 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Chd3B1AR17 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Chd3B1AR17 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 A330040F15Rik-202ENSMUST00000224046 1918 ntBASIC15.51■□□□□ 0.07
Chd3B1AR17 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.51■□□□□ 0.07
Chd3B1AR17 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Mettl7a1-201ENSMUST00000067752 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Chd3B1AR17 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gm37500-201ENSMUST00000192059 1443 ntBASIC15.5■□□□□ 0.07
Chd3B1AR17 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Chd3B1AR17 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Chd3B1AR17 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms