RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 DUSP28Q4G0W2 176 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 GNASQ5JWF2 1037 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 RBM44Q6ZP01 1051 aaKnown RBP6.38□□□□□ -1.39
VPS13D-202ENST00000460333 CLVS1Q8IUQ0 354 aaPredicted RBP6.38□□□□□ -1.39
VPS13D-202ENST00000460333 ARHGEF19Q8IW93 802 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 FAM71AQ8IYT1 594 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 FAR2Q96K12 515 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 COX4I2Q96KJ9 171 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 GCNAQ96QF7 691 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 TUBGCP5Q96RT8 1024 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 ASB7Q9H672 318 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 NSMCE4AQ9NXX6 385 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 XPO7Q9UIA9 1087 aaKnown RBP6.38□□□□□ -1.39
VPS13D-202ENST00000460333 TNFSF13BQ9Y275 285 aa6.38□□□□□ -1.39
VPS13D-202ENST00000460333 A0A0B4J269 797 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FAM25AB3EWG3 89 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FAM25CB3EWG5 89 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FAM25GB3EWG6 89 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 H3BNX3 289 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 C2CD2LO14523 706 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ANGPT2O15123 496 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ADCY6O43306 1168 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 TLR2O60603 784 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 RGS20O76081 388 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CBX6O95503 412 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CYP2C9P11712 490 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZNF12P17014 697 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PSMA4P25789 261 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 KRT6CP48668 564 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 NUDT2P50583 147 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 MAP2K5Q13163 448 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 AUHQ13825 339 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SNX17Q15036 470 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 GRIK4Q16099 956 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PPP1R15BQ5SWA1 713 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 NOTUMQ6P988 496 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZBTB8BQ8NAP8 495 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 S100ZQ8WXG8 99 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SHC3Q92529 594 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZNF75CPQ92670 426 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PTPRN2Q92932 1015 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 OMA1Q96E52 524 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 TMA16Q96EY4 203 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FIZ1Q96SL8 496 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 POP1Q99575 1024 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 C11orf70Q9BRQ4 267 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZNF518BQ9C0D4 1074 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PAK5Q9P286 719 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZC3H7BQ9UGR2 993 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CPA4Q9UI42 421 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FIS1Q9Y3D6 152 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SQORQ9Y6N5 450 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 LOXHD1Q8IVV2 1947 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SGPL1O95470 568 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 RARAP10276 462 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CLK1P49759 484 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SP2Q02086 613 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CCNG2Q16589 344 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZACNQ401N2 412 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PDCD4Q53EL6 469 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 MFSD5Q6N075 450 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZCCHC7Q8N3Z6 543 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 GIPC3Q8TF64 312 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 BORCS6Q96GS4 357 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 CNDP1Q96KN2 507 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FBXL18Q96ME1 805 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FAM111AQ96PZ2 611 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PPP1R16BQ96T49 567 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ACO2Q99798 780 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 TMEM79Q9BSE2 394 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 GRIP2Q9C0E4 1043 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PIDD1Q9HB75 910 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 TBCCD1Q9NVR7 557 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 DCDC2Q9UHG0 476 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 COQ4Q9Y3A0 265 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 IGKV6D-21A0A0A0MT36 114 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PENKP01210 267 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 LYNP07948 512 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PMLP29590 882 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 AXLP30530 894 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ADCYAP1R1P41586 468 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 EIF3EP60228 445 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 POU5F1Q01860 360 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PIGHQ14442 188 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 PDK4Q16654 411 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ASTE1Q2TB18 679 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 HSDL1Q3SXM5 330 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 RNF220Q5VTB9 566 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 RSBN1Q5VWQ0 802 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 TRIM69Q86WT6 500 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 FAM13CQ8NE31 585 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 VCPIP1Q96JH7 1222 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ZNF560Q96MR9 790 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 STN1Q9H668 368 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 ARHGEF3Q9NR81 526 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 MARCOQ9UEW3 520 aaPredicted RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 SHOC2Q9UQ13 582 aa6.37□□□□□ -1.39
VPS13D-202ENST00000460333 COPG1Q9Y678 874 aaKnown RBP6.37□□□□□ -1.39
VPS13D-202ENST00000460333 NCANO14594 1321 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms