RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ARL2P36404 184 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 SP3Q02447 781 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 FSTL1Q12841 308 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 ACVR2BQ13705 512 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 LIN52Q52LA3 116 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 LDLRAD1Q5T700 205 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 TMEM270Q6UE05 265 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 PPIL6Q8IXY8 311 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 ZNF786Q8N393 782 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 CYGBQ8WWM9 190 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 VPS11Q9H270 941 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 ASNSD1Q9NWL6 643 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 PTTG2Q9NZH5 202 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 WDR35Q9P2L0 1181 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 AK5Q9Y6K8 562 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 UMODL1Q5DID0 1318 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 KANSL1LA0AUZ9 987 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GOLGA8SH3BPF8 625 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GOLGA8MH3BSY2 632 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 DYNC1LI2O43237 492 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 KPNA6O60684 536 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 RPLP2P05387 115 aaKnown RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 FCGR1AP12314 374 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SAT1P21673 171 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 EDNRBP24530 442 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GNA15P30679 374 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CPA2P48052 419 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 LLGL1Q15334 1064 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 DCAF4L1Q3SXM0 396 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CCDC103Q8IW40 242 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ASAP3Q8TDY4 903 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SOCS4Q8WXH5 440 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 RNF34Q969K3 372 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 TUBGCP3Q96CW5 907 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 OXNAD1Q96HP4 312 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ADNPQ9H2P0 1102 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 HMG20AQ9NP66 347 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ALG13Q9NP73 1137 aaKnown RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 NMRK1Q9NWW6 199 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SEPT10Q9P0V9 454 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ARIH1Q9Y4X5 557 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 DOCK1Q14185 1865 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 BTBD19C9JJ37 291 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 KLHL41O60662 606 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SEC24DO94855 1032 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 DLGAP3O95886 979 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CDC25CP30307 473 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SOX10P56693 466 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ARPC4P59998 168 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 OSTNP61366 133 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 STX5Q13190 355 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 PDK3Q15120 406 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CHI3L2Q15782 390 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SPRYD7Q5W111 196 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ARID3BQ8IVW6 561 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 BRSK2Q8IWQ3 736 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 OR6Y1Q8NGX8 325 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 AFG1LQ8WV93 481 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 RNF25Q96BH1 459 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 VPS39Q96JC1 886 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 BRD8Q9H0E9 1235 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 TRPC7Q9HCX4 862 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 NMRK2Q9NPI5 230 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 RRN3Q9NYV6 651 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 NAALADL1Q9UQQ1 740 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CDYLQ9Y232 598 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 REXO2Q9Y3B8 237 aaKnown RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 H3BRB1 525 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 FCHO1O14526 889 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 PSTPIP1O43586 416 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ATP6V1G1O75348 118 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 LGALS2P05162 132 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 APOA4P06727 396 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 WEE2P0C1S8 567 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 ENO3P13929 434 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 PAMP19021 973 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 TYK2P29597 1187 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CASP2P42575 452 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CDK7P50613 346 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 PPP3CAQ08209 521 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 CUL2Q13617 745 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 EPC2Q52LR7 807 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 IRF2BP2Q7Z5L9 587 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GPR142Q7Z601 462 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 DNAAF3Q8N9W5 541 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 BEST2Q8NFU1 509 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 PPTC7Q8NI37 304 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 TINF2Q9BSI4 451 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 NIF3L1Q9GZT8 377 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 FAM49AQ9H0Q0 323 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 TUT1Q9H6E5 874 aaKnown RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 HMX1Q9NP08 348 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SCN3BQ9NY72 215 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 KCNK4Q9NYG8 393 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 NXF1Q9UBU9 619 aaKnown RBP6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GTF3C4Q9UKN8 822 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SESN1Q9Y6P5 492 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 SIPA1L1O43166 1804 aa6.39□□□□□ -1.39
VPS13D-202ENST00000460333 GRIN2DO15399 1336 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms