RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 TMEM8AQ9HCN3 771 aa16.59■□□□□ 0.25
CLK3-211ENST00000563297 DNAJC17Q9NVM6 304 aaKnown RBP16.59■□□□□ 0.25
CLK3-211ENST00000563297 MARK1Q9P0L2 795 aa16.59■□□□□ 0.25
CLK3-211ENST00000563297 WDR35Q9P2L0 1181 aa16.59■□□□□ 0.25
CLK3-211ENST00000563297 DNMT3LQ9UJW3 386 aa16.59■□□□□ 0.25
CLK3-211ENST00000563297 LSM7Q9UK45 103 aaKnown RBP16.59■□□□□ 0.25
CLK3-211ENST00000563297 USP3Q9Y6I4 520 aa16.59■□□□□ 0.25
CLK3-211ENST00000563297 NEDD8-MDP1E9PL57 170 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 CACNG3O60359 315 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 KRT37O76014 449 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 CISD3P0C7P0 127 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 TYRP14679 529 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 NTSR1P30989 418 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 GTF2H1P32780 548 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 WASP42768 502 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 PTGER3P43115 390 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 GOLGA8FQ08AF8 430 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 GOLGA8DPQ0D2H9 430 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 BYSLQ13895 437 aaKnown RBP16.58■□□□□ 0.24
CLK3-211ENST00000563297 ZNF394Q53GI3 561 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 SPDYCQ5MJ68 293 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 C10orf120Q5SQS8 335 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 DAB2IPQ5VWQ8 1189 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 KRT39Q6A163 491 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 GRAMD4Q6IC98 578 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 PSAPL1Q6NUJ1 521 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 TRMT11Q7Z4G4 463 aaKnown RBP16.58■□□□□ 0.24
CLK3-211ENST00000563297 SEMA4DQ92854 862 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 EEF2KMTQ96G04 330 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 ACOX2Q99424 681 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 SCAND2PQ9GZW5 306 aaPredicted RBP16.58■□□□□ 0.24
CLK3-211ENST00000563297 TMEM74BQ9NUR3 256 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 ANGPTL2Q9UKU9 493 aa16.58■□□□□ 0.24
CLK3-211ENST00000563297 TNRC6BQ9UPQ9 1833 aaKnown RBP16.58■□□□□ 0.24
CLK3-211ENST00000563297 A0A1W2PQF6 199 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 PRRT4C9JH25 899 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 GIPC1O14908 333 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 GABRG2P18507 467 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 PSEN1P49768 467 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 SHC2P98077 582 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 EDRF1Q3B7T1 1238 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 EGFLAMQ63HQ2 1017 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 Q6ZNB5 142 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 TOGARAM2Q6ZUX3 1019 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 ARMCX6Q7L4S7 300 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 CCDC186Q7Z3E2 898 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 CCDC150Q8NCX0 1101 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 P2RY11Q96G91 374 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 FAXDC2Q96IV6 333 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 HEXIM2Q96MH2 286 aaKnown RBP16.57■□□□□ 0.24
CLK3-211ENST00000563297 CD248Q9HCU0 757 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 TMEM9BQ9NQ34 198 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 EVLQ9UI08 416 aaPredicted RBP16.57■□□□□ 0.24
CLK3-211ENST00000563297 NAGPAQ9UK23 515 aa16.57■□□□□ 0.24
CLK3-211ENST00000563297 STC2O76061 302 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 KLKB1P03952 638 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 HOXB2P14652 356 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 TRIM61Q5EBN2 209 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 SYT12Q8IV01 421 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 SMYD4Q8IYR2 804 aaPredicted RBP16.56■□□□□ 0.24
CLK3-211ENST00000563297 SLC4A11Q8NBS3 891 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 TATDN2Q93075 761 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 UBXN6Q9BZV1 441 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 DNAI2Q9GZS0 605 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 GDPD2Q9HCC8 539 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 CISHQ9NSE2 258 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 RAB20Q9NX57 234 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 CLIC5Q9NZA1 410 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 FBXO10Q9UK96 956 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 ATP6V1DQ9Y5K8 247 aa16.56■□□□□ 0.24
CLK3-211ENST00000563297 RALAP11233 206 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 ITPKAP23677 461 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 DGKGP49619 791 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 NOVA1P51513 510 aaKnown RBP16.55■□□□□ 0.24
CLK3-211ENST00000563297 RAD23BP54727 409 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 ST3GAL2Q16842 350 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 SDE2Q6IQ49 451 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 KIAA1211LQ6NV74 962 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 CHPFQ8IZ52 775 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 TTC39CQ8N584 583 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 FBXL13Q8NEE6 735 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 IPO4Q8TEX9 1081 aaKnown RBP16.55■□□□□ 0.24
CLK3-211ENST00000563297 TMEM176AQ96HP8 235 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 NUSAP1Q9BXS6 441 aaKnown RBP16.55■□□□□ 0.24
CLK3-211ENST00000563297 PLK2Q9NYY3 685 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 CALCOCO1Q9P1Z2 691 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 PILRBQ9UKJ0 227 aa16.55■□□□□ 0.24
CLK3-211ENST00000563297 CETN3O15182 167 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 AP5Z1O43299 807 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 PRCPP42785 496 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 MXI1P50539 228 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 COG7P83436 770 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 LMAN2Q12907 356 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 RAB41Q5JT25 222 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 SH3PXD2AQ5TCZ1 1133 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 LYSMD4Q5XG99 296 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 SLC23A3Q6PIS1 610 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 SLC36A4Q6YBV0 504 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 TADA2BQ86TJ2 420 aa16.54■□□□□ 0.24
CLK3-211ENST00000563297 DEFB119Q8N690 84 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms