RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TFR2Q9UP52 801 aa6.41□□□□□ -1.38
VPS13D-202ENST00000460333 A0A087WXM4 84 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DPPA5A6NC42 116 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MATN2O00339 956 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 EPHB6O15197 1021 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 AKAP10O43572 662 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SH3BP5O60239 455 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CDH2P19022 906 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DRG2P55039 364 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PRAMEP78395 509 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CDK16Q00536 496 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ROR1Q01973 937 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GCNT1Q02742 428 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 NCOA4Q13772 614 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 RGS21Q2M5E4 152 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CCDC153Q494R4 210 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MDH1BQ5I0G3 518 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 HP1BP3Q5SSJ5 553 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM63BQ5T3F8 832 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PLEKHA7Q6IQ23 1121 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 C11orf63Q6NUN7 778 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TTC27Q6P3X3 843 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MPZL3Q6UWV2 235 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CATSPER4Q7RTX7 472 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 FBXO25Q8TCJ0 367 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 RMND5BQ96G75 393 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CAPNS2Q96L46 248 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MFSD14AQ96MC6 490 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 APOL6Q9BWW8 343 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PAIP1Q9H074 479 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DHX33Q9H6R0 707 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 EML4Q9HC35 981 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SMYD2Q9NRG4 433 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 RBPJLQ9UBG7 517 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TTC7AQ9ULT0 858 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SOX13Q9UN79 622 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MYRFQ9Y2G1 1151 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PCDHGC5Q9Y5F6 944 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ATP8B3O60423 1300 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 COL4A5P29400 1685 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 FOXN3O00409 490 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CYP26A1O43174 497 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 BCL10O95999 233 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GSNP06396 782 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 C6orf222P0C671 652 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GLRA2P23416 452 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PSMA2P25787 234 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MMP13P45452 471 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CPT1AP50416 773 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ABCE1P61221 599 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 BNIP1Q12981 228 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 AASDHQ4L235 1098 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 FAM43BQ6ZT52 329 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM67Q6ZTA4 783 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 WDR49Q8IV35 697 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DAW1Q8N136 415 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PCYOX1LQ8NBM8 494 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM35BQ8NCS4 154 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DLG3Q92796 817 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ZBTB18Q99592 522 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CALN1Q9BXU9 219 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 RNF208Q9H0X6 261 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DIABLOQ9NR28 239 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 UBAP1Q9NZ09 502 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ARHGAP28Q9P2N2 729 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GMEB1Q9Y692 573 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 FER1L6Q2WGJ9 1857 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ANKRD63C9JTQ0 380 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ZNF862O60290 1169 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ATG7O95352 703 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 MYL2P10916 166 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 YBX3P16989 372 aaKnown RBP eCLIP6.4□□□□□ -1.385e-8■■□□□ 14.5
VPS13D-202ENST00000460333 ARL4AP40617 200 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DMPKQ09013 629 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 NFX1Q12986 1120 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GRIK3Q13003 919 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 FAM110CQ1W6H9 321 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CBWD6Q4V339 395 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CBWD3Q5JTY5 395 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 CBWD5Q5RIA9 395 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GJB7Q6PEY0 223 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 BNC2Q6ZN30 1099 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SV2AQ7L0J3 742 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ZNF467Q7Z7K2 595 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 LRRC71Q8N4P6 559 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 BORCS5Q969J3 196 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GPR20Q99678 358 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SH3GL1Q99961 368 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 TBC1D10AQ9BXI6 508 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 SLC13A1Q9BZW2 595 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 GPAMQ9HCL2 828 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 PARVAQ9NVD7 372 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 DDX18Q9NVP1 670 aaKnown RBP6.4□□□□□ -1.38
VPS13D-202ENST00000460333 HESX1Q9UBX0 185 aa6.4□□□□□ -1.38
VPS13D-202ENST00000460333 ARFGEF1Q9Y6D6 1849 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 COL1A2P08123 1366 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 PDE2AO00408 941 aaPredicted RBP6.4□□□□□ -1.39
VPS13D-202ENST00000460333 ACKR2O00590 384 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 NOL4O94818 638 aa6.4□□□□□ -1.39
VPS13D-202ENST00000460333 COMTP21964 271 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms