RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 TM4SF5O14894 197 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 DGKEP52429 567 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 LIMK1P53667 647 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 SEC13P55735 322 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 MESP2Q0VG99 397 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 SGSM1Q2NKQ1 1148 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 SNX30Q5VWJ9 437 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 ACOT1Q86TX2 421 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 FUKQ8N0W3 1084 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 PDZD8Q8NEN9 1154 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 OVCA2Q8WZ82 227 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 FBXO32Q969P5 355 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 TNIP3Q96KP6 325 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 MED10Q9BTT4 135 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 SMOC1Q9H4F8 434 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 EXOC1Q9NV70 894 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 GON4LQ3T8J9 2241 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 THADAQ6YHU6 1953 aa16.71■□□□□ 0.27
CLK3-211ENST00000563297 NUP205Q92621 2012 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 A0A0A0MRY4 1105 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 E2F8A0AVK6 867 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 COCHO43405 550 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 RHOBTB1O94844 696 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 NR3C1P04150 777 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 CMA1P23946 247 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 MPLP40238 635 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 MRPS21P82921 87 aaKnown RBP16.7■□□□□ 0.26
CLK3-211ENST00000563297 ZACNQ401N2 412 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 SCARA5Q6ZMJ2 495 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 SV2AQ7L0J3 742 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 DDX42Q86XP3 938 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLK3-211ENST00000563297 SFTPA1Q8IWL2 248 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 CRYBG2Q8N1P7 616 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 CCDC33Q8N5R6 958 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 ZMIZ2Q8NF64 920 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 TSTD1Q8NFU3 115 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 TMC2Q8TDI7 906 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 SMARCD1Q96GM5 515 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 ZFRQ96KR1 1074 aaKnown RBP16.7■□□□□ 0.26
CLK3-211ENST00000563297 PNKPQ96T60 521 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 DMAP1Q9NPF5 467 aaPredicted RBP16.7■□□□□ 0.26
CLK3-211ENST00000563297 VPS45Q9NRW7 570 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 TBC1D14Q9P2M4 693 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 MMP17Q9ULZ9 603 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 INVSQ9Y283 1065 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 ATP8B3O60423 1300 aa16.7■□□□□ 0.26
CLK3-211ENST00000563297 LAMA1P25391 3075 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 CACNA1BQ00975 2339 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 FAM92AA1XBS5 289 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 IKBKBO14920 756 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 AP1G2O75843 785 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 BEST1O76090 585 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 CLSTN1O94985 981 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 RPN1P04843 607 aaKnown RBP16.69■□□□□ 0.26
CLK3-211ENST00000563297 ZDHHC11BP0C7U3 371 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 CHRM1P11229 460 aaPredicted RBP16.69■□□□□ 0.26
CLK3-211ENST00000563297 PFKFB1P16118 471 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 EIF2DP41214 584 aaKnown RBP16.69■□□□□ 0.26
CLK3-211ENST00000563297 SLC5A3P53794 718 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 ELF2Q15723 593 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 CRY1Q16526 586 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 LY6G5CQ5SRR4 150 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 C1orf220Q5T0J3 134 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 HECTD3Q5T447 861 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 EMC10Q5UCC4 262 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 IL31Q6EBC2 164 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 TMEM92Q6UXU6 159 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 RASSF3Q86WH2 238 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 C12orf40Q86WS4 652 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 DDX1Q92499 740 aaKnown RBP16.69■□□□□ 0.26
CLK3-211ENST00000563297 SMOQ99835 787 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 TPSD1Q9BZJ3 242 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 CCSER2Q9H7U1 834 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 COMMD8Q9NX08 183 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 USP25Q9UHP3 1055 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 HPSEQ9Y251 543 aa16.69■□□□□ 0.26
CLK3-211ENST00000563297 BCLAF3A2AJT9 711 aaKnown RBP16.68■□□□□ 0.26
CLK3-211ENST00000563297 KAT7O95251 611 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 ADH1CP00326 375 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 ADH5P11766 374 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 P4HA1P13674 534 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 CCDC130P13994 396 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 HNRNPLP14866 589 aaKnown RBP eCLIP16.68■□□□□ 0.26
CLK3-211ENST00000563297 PGFP49763 221 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 NDST1P52848 882 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 ORC1Q13415 861 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 USP39Q53GS9 565 aaKnown RBP16.68■□□□□ 0.26
CLK3-211ENST00000563297 STPG1Q5TH74 334 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 ANO7Q6IWH7 933 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 UNC93AQ86WB7 457 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 TAF4BQ92750 862 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 WBP2Q969T9 261 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 CHAMP1Q96JM3 812 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 CSNK1G1Q9HCP0 422 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 GMIPQ9P107 970 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 TRAF3IP3Q9Y228 551 aa16.68■□□□□ 0.26
CLK3-211ENST00000563297 EPG5Q9HCE0 2579 aa16.67■□□□□ 0.26
CLK3-211ENST00000563297 CAVIN2O95810 425 aa16.67■□□□□ 0.26
CLK3-211ENST00000563297 ASS1P00966 412 aaKnown RBP16.67■□□□□ 0.26
CLK3-211ENST00000563297 APODP05090 189 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms