RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 SNX25Q9H3E2 840 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 MAGEF1Q9HAY2 307 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 SLC39A2Q9NP94 309 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 PCDHA7Q9UN72 937 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 ARHGAP26Q9UNA1 814 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 SLC8A2Q9UPR5 921 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 EML5Q05BV3 1969 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 TPRP12270 2363 aaKnown RBP16.8■□□□□ 0.28
CLK3-211ENST00000563297 UBE4BO95155 1302 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 PVALEFA0A1B0GWK0 134 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 ZSCAN22P10073 491 aaPredicted RBP16.8■□□□□ 0.28
CLK3-211ENST00000563297 PTPN1P18031 435 aaKnown RBP16.8■□□□□ 0.28
CLK3-211ENST00000563297 IFNAR2P48551 515 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 KCNB1Q14721 858 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 BMT2Q1RMZ1 405 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 FBXO43Q4G163 708 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 MDH1BQ5I0G3 518 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 PRR23CQ6ZRP0 262 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 HS2ST1Q7LGA3 356 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 CAMKK1Q8N5S9 505 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 OR6B3Q8NGW1 331 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 GAB3Q8WWW8 586 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 CD101Q93033 1021 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 ATP2A3Q93084 1043 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 C8orf48Q96LL4 319 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 TTLL2Q9BWV7 592 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 TRPM5Q9NZQ8 1165 aa16.8■□□□□ 0.28
CLK3-211ENST00000563297 MYOFQ9NZM1 2061 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 F8VP50 259 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 TRIM66O15016 1216 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 AXIN1O15169 862 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 GDF9O60383 454 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 STAU1O95793 577 aaKnown RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 F13A1P00488 732 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 PDIA4P13667 645 aaKnown RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 PFKLP17858 780 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 ANXA13P27216 316 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 AFMP43652 599 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 MYL6P60660 151 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 NOP14P78316 857 aaKnown RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 NR1H3Q13133 447 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 CUL4BQ13620 913 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 KNOP1Q1ED39 458 aaKnown RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 RESP18Q5W5W9 173 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 C12orf56Q8IXR9 622 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 NETO1Q8TDF5 533 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 EXOC4Q96A65 974 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 RNF38Q9H0F5 515 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 DPEP3Q9H4B8 488 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 TMEM30AQ9NV96 361 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 FAM13BQ9NYF5 915 aa16.79■□□□□ 0.28
CLK3-211ENST00000563297 CGNQ9P2M7 1197 aaKnown RBP16.79■□□□□ 0.28
CLK3-211ENST00000563297 HELZP42694 1942 aaKnown RBP16.78■□□□□ 0.28
CLK3-211ENST00000563297 CNOT1A5YKK6 2376 aaKnown RBP16.78■□□□□ 0.28
CLK3-211ENST00000563297 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.78■□□□□ 0.28
CLK3-211ENST00000563297 ZNF840PA6NDX5 716 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 SLC30A4O14863 429 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 RPP40O75818 363 aaKnown RBP16.78■□□□□ 0.28
CLK3-211ENST00000563297 RAP1GAPP47736 663 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 ME1P48163 572 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 PPP3CCP48454 512 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 PDE6CP51160 858 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 CACNA2D1P54289 1103 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 TNNC1P63316 161 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 TRPC3Q13507 836 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 SYT13Q7L8C5 426 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 CACNA2D4Q7Z3S7 1137 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 KBTBD6Q86V97 674 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 RPLP0P6Q8NHW5 317 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 PLEKHO2Q8TD55 490 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 LOXL4Q96JB6 756 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 B3GNT5Q9BYG0 378 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 XYLT2Q9H1B5 865 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 ARRDC1-AS1Q9H2J1 176 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 EHD2Q9NZN4 543 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 NXF1Q9UBU9 619 aaKnown RBP16.78■□□□□ 0.28
CLK3-211ENST00000563297 MYO16Q9Y6X6 1858 aa16.78■□□□□ 0.28
CLK3-211ENST00000563297 A8MXQ7 604 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 LEFTY2O00292 366 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 CLDN5O00501 218 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 EXOC3O60645 756 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 ATICP31939 592 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 CASP4P49662 377 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 SLC7A9P82251 487 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 TAF10Q12962 218 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 ATL3Q6DD88 541 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 GRAMD1CQ8IYS0 662 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 ADGRG2Q8IZP9 1017 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 ABCA7Q8IZY2 2146 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 HHIPQ96QV1 700 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 ZNF518BQ9C0D4 1074 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 SERTAD1Q9UHV2 236 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 RCOR1Q9UKL0 485 aa16.77■□□□□ 0.28
CLK3-211ENST00000563297 KLRC4O43908 158 aa16.76■□□□□ 0.27
CLK3-211ENST00000563297 FOXD2O60548 495 aaPredicted RBP16.76■□□□□ 0.27
CLK3-211ENST00000563297 PHACTR2O75167 634 aa16.76■□□□□ 0.27
CLK3-211ENST00000563297 NFATC1O95644 943 aa16.76■□□□□ 0.27
CLK3-211ENST00000563297 OLFM2O95897 454 aa16.76■□□□□ 0.27
CLK3-211ENST00000563297 ABL1P00519 1130 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms