RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 FAM26FQ5R3K3 315 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 C4orf50Q6ZRC1 276 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 WDR5BQ86VZ2 330 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 WDR49Q8IV35 697 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 ARL14EPQ8N8R7 260 aaPredicted RBP16.85■□□□□ 0.29
CLK3-211ENST00000563297 SYT15Q9BQS2 421 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 TRPC7Q9HCX4 862 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 GCNT4Q9P109 453 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 SPAG17Q6Q759 2223 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 TRAV19A0A0A6YYK7 116 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 CLIC2O15247 247 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 LRP3O75074 770 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 EGFP01133 1207 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 USP17L7P0C7H9 530 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 WARSP23381 471 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 BDNFP23560 247 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 GJA4P35212 333 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 PSMC1P62191 440 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 AMPD2Q01433 879 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 EHHADHQ08426 723 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 MTF1Q14872 753 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 ZNF77Q15935 545 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 SNRNP35Q16560 246 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 FOXD4L5Q5VV16 416 aaPredicted RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 VSTM1Q6UX27 236 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 FSIP1Q8NA03 581 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 SCFD1Q8WVM8 642 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 FOXD4L4Q8WXT5 416 aaPredicted RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 SPATA17Q96L03 361 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 MMS19Q96T76 1030 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 ECT2Q9H8V3 914 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 AGPAT3Q9NRZ7 376 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 DUS2Q9NX74 493 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 CDV3Q9UKY7 258 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 NME7Q9Y5B8 376 aa16.84■□□□□ 0.29
CLK3-211ENST00000563297 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.84■□□□□ 0.29
CLK3-211ENST00000563297 C2orf78A6NCI8 922 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 POLR2DO15514 142 aaKnown RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 ATG13O75143 517 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 CKMP06732 381 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 DLATP10515 647 aaKnown RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 HDCP19113 662 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 TNNI1P19237 187 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 PTPRDP23468 1912 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 CASP1P29466 404 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 SNRPFP62306 86 aaKnown RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 PSMD6Q15008 389 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 MAPRE1Q15691 268 aaKnown RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 NAIF1Q69YI7 327 aaPredicted RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 UNC13DQ70J99 1090 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 CEP68Q76N32 757 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 FAM160A2Q8N612 972 aaPredicted RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 OSCP1Q8WVF1 389 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 ZNF516Q92618 1163 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 SNX21Q969T3 373 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 MYLPFQ96A32 169 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 MRPL45Q9BRJ2 306 aaKnown RBP16.83■□□□□ 0.28
CLK3-211ENST00000563297 SEMA4GQ9NTN9 838 aa16.83■□□□□ 0.28
CLK3-211ENST00000563297 CCDC163A0A0D9SF12 145 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 DCDC2BA2VCK2 349 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 RNF40O75150 1001 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 FAM163BP0C2L3 166 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 DRD1P21728 446 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 GNL1P36915 607 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 GRIK1P39086 918 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 PXNP49023 591 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 CYP2J2P51589 502 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 USP46P62068 366 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 CYP27A1Q02318 531 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 CYP24A1Q07973 514 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 USP4Q13107 963 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 FOXD4L6Q3SYB3 417 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 FOXD4L3Q6VB84 417 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 NELFCDQ8IXH7 590 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 XXYLT1Q8NBI6 393 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 TTC16Q8NEE8 873 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 MYCBPAPQ8TBZ2 947 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 SH3RF2Q8TEC5 729 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 PCED1BQ96HM7 432 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 CEP295NLQ96MC4 621 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 FNBP1Q96RU3 617 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 CGRRF1Q99675 332 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 P2RY13Q9BPV8 354 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 RTKNQ9BST9 563 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 GZF1Q9H116 711 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 BLZF1Q9H2G9 400 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 LINC00597Q9H2U6 94 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 POLR3BQ9NW08 1133 aaPredicted RBP16.82■□□□□ 0.28
CLK3-211ENST00000563297 WNT6Q9Y6F9 365 aa16.82■□□□□ 0.28
CLK3-211ENST00000563297 TACC1O75410 805 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 TCF3P15923 654 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 ZXDBP98169 803 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 CSRP2Q16527 193 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 EML3Q32P44 896 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 WDR72Q3MJ13 1102 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 DENND5BQ6ZUT9 1274 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 CPA6Q8N4T0 437 aa16.81■□□□□ 0.28
CLK3-211ENST00000563297 EZH1Q92800 747 aaPredicted RBP16.81■□□□□ 0.28
CLK3-211ENST00000563297 CCDC127Q96BQ5 260 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms