RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 BACH2Q9BYV9 841 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 TNMDQ9H2S6 317 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 PARD6AQ9NPB6 346 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 HPS4Q9NQG7 708 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 INTS13Q9NVM9 706 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 RAB23Q9ULC3 237 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 RALGAPA1Q6GYQ0 2036 aa16.9■□□□□ 0.3
CLK3-211ENST00000563297 K7ELQ4 463 aaPredicted RBP16.89■□□□□ 0.29
CLK3-211ENST00000563297 PPP6R2O75170 966 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 ATP2C2O75185 946 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 NOL4O94818 638 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 DUOXA2Q1HG44 320 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 TRIM68Q6AZZ1 485 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 FAM171BQ6P995 826 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 STXBP4Q6ZWJ1 553 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 DPH6Q7L8W6 267 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 CBWD2Q8IUF1 395 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 ADGRF2Q8IZF7 708 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 TRMT2BQ96GJ1 504 aaKnown RBP16.89■□□□□ 0.29
CLK3-211ENST00000563297 ANKRD36BP1Q96IX9 119 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 TRIM9Q9C026 710 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 LRRC27Q9C0I9 530 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 EBF3Q9H4W6 596 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 UXTQ9UBK9 157 aaPredicted RBP16.89■□□□□ 0.29
CLK3-211ENST00000563297 GMEB2Q9UKD1 530 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 ANAPC1Q9H1A4 1944 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 SPTBN2O15020 2390 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 PTPRJQ12913 1337 aa16.89■□□□□ 0.29
CLK3-211ENST00000563297 TADA3O75528 432 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 SDHBP21912 280 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 LMO2P25791 158 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 PCSK1P29120 753 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 HOXA6P31267 233 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 CNR2P34972 360 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 MYO1EQ12965 1108 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 SRSF5Q13243 272 aaKnown RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 SIM2Q14190 667 aaPredicted RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 ZNF268Q14587 947 aaPredicted RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 SURF1Q15526 300 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 CFAP221Q4G0U5 840 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 TMEM196Q5HYL7 178 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 HEATR6Q6AI08 1181 aaKnown RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 LAIR1Q6GTX8 287 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 PRR23BQ6ZRT6 265 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 LONP2Q86WA8 852 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 SPATA2LQ8IUW3 424 aaPredicted RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 ZNF507Q8TCN5 953 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 CHFRQ96EP1 664 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 HPDLQ96IR7 371 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 CYP2S1Q96SQ9 504 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 CUEDC2Q9H467 287 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 KIF9Q9HAQ2 790 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 HSPBP1Q9NZL4 362 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 USP18Q9UMW8 372 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 R3HCC1Q9Y3T6 440 aaKnown RBP16.88■□□□□ 0.29
CLK3-211ENST00000563297 GREB1Q4ZG55 1949 aa16.88■□□□□ 0.29
CLK3-211ENST00000563297 PRR5-ARHGAP8B1AHC4 643 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 TRDMT1O14717 391 aaKnown RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 CST3P01034 146 aaPredicted RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 TNNC2P02585 160 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 RETP07949 1114 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 ARSAP15289 507 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 ATXN1P54253 815 aaKnown RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 ARHGAP8P85298 464 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 AMPD3Q01432 767 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 LMNB2Q03252 620 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 SPEM2Q0P670 501 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 FSTL4Q6MZW2 842 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 CNNM4Q6P4Q7 775 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 PKN3Q6P5Z2 889 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 SHC4Q6S5L8 630 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 EPM2AIP1Q7L775 607 aaPredicted RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 SCN4BQ8IWT1 228 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 KBTBD7Q8WVZ9 684 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 DHX58Q96C10 678 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 FUBP3Q96I24 572 aaKnown RBP eCLIP16.87■□□□□ 0.29
CLK3-211ENST00000563297 ZNF396Q96N95 335 aaPredicted RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 SLC22A12Q96S37 553 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 KIAA1586Q9HCI6 787 aa16.87■□□□□ 0.29
CLK3-211ENST00000563297 FBRSL1Q9HCM7 1045 aaKnown RBP16.87■□□□□ 0.29
CLK3-211ENST00000563297 EIF3DO15371 548 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLK3-211ENST00000563297 TGFB1I1O43294 461 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 CUTAO60888 179 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 MAGEA11P43364 429 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 GRSF1Q12849 480 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLK3-211ENST00000563297 CC2D1AQ6P1N0 951 aaPredicted RBP16.86■□□□□ 0.29
CLK3-211ENST00000563297 TRAPPC11Q7Z392 1133 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 IQUBQ8NA54 791 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 RDH13Q8NBN7 331 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 C7orf25Q9BPX7 421 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 CRTAC1Q9NQ79 661 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 MAGEC2Q9UBF1 373 aaPredicted RBP16.86■□□□□ 0.29
CLK3-211ENST00000563297 CDH9Q9ULB4 789 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 NCOR2Q9Y618 2525 aa16.86■□□□□ 0.29
CLK3-211ENST00000563297 YEATS4O95619 227 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 PDGFRBP09619 1106 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 GALK1P51570 392 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 ASIC1P78348 528 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 FAM160A1Q05DH4 1040 aa16.85■□□□□ 0.29
CLK3-211ENST00000563297 PDGFRLQ15198 375 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 152.8 ms