RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 ADH7P40394 386 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 PRPHP41219 470 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 HSD17B4P51659 736 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 EPHB4P54760 987 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 ATP2C1P98194 919 aaPredicted RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 FSCN1Q16658 493 aaKnown RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 UBE2SQ16763 222 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 PRRT3Q5FWE3 981 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 PPP4R3AQ6IN85 833 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 CCSAPQ6IQ19 270 aaPredicted RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 TLK2Q86UE8 772 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 FAM126BQ8IXS8 530 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 MICALL1Q8N3F8 863 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 TSEN2Q8NCE0 465 aaKnown RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 ENGASEQ8NFI3 743 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 CRYGNQ8WXF5 182 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 CLEC4DQ8WXI8 215 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 HERVK_113Q902F9 699 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 TBC1D5Q92609 795 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 SYAP1Q96A49 352 aaPredicted RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 NAP1L4Q99733 375 aaKnown RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 PBX4Q9BYU1 374 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 RNF146Q9NTX7 359 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 TMEM260Q9NX78 707 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 THEGQ9P2T0 379 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 FBXO2Q9UK22 296 aaPredicted RBP6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 SLC4A7Q9Y6M7 1214 aa6.94□□□□□ -1.3
DEPDC4-209ENST00000550587 MYH7BA7E2Y1 1941 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 VCANP13611 3396 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 LOC102724159A0A0B4J2E5 919 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 MYADML2A6NDP7 307 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 SPDYE3A6NKU9 549 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 ATP9BO43861 1147 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CCNT1O60563 726 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 LETM1O95202 739 aaPredicted RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CFBP00751 764 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 LIG1P18858 919 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CYP2C18P33260 490 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 SREBF1P36956 1147 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CPT1AP50416 773 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 BEX3Q00994 111 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CNTN2Q02246 1040 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 FAM160A1Q05DH4 1040 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 SNW1Q13573 536 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 PWP2Q15269 919 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CCDC85BQ15834 202 aaPredicted RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 RSPO4Q2I0M5 234 aaPredicted RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 LETM2Q2VYF4 491 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 RESP18Q5W5W9 173 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CAVIN1Q6NZI2 390 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 MOXD1Q6UVY6 613 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CXCL17Q6UXB2 119 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 NSMFQ6X4W1 530 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CCDC73Q6ZRK6 1079 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 OTOP2Q7RTS6 562 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 FAM133AQ8N9E0 248 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 FSIP1Q8NA03 581 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 RETREG2Q8NC44 543 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 MRPS27Q92552 414 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 SUSD3Q96L08 255 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 MBOAT7Q96N66 472 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 CLIC6Q96NY7 704 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 PSMG3-AS1Q96PY0 264 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 ASB2Q96Q27 587 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 ANO3Q9BYT9 981 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 PRDM12Q9H4Q4 367 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 VTA1Q9NP79 307 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 A1CFQ9NQ94 594 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 TPSG1Q9NRR2 321 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 DDX19AQ9NUU7 478 aaKnown RBP6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 TMEM63CQ9P1W3 806 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 RAPGEFL1Q9UHV5 662 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 LAMA3Q16787 3333 aa6.93□□□□□ -1.3
DEPDC4-209ENST00000550587 KRTAP9-6A0A140TA67 174 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 A0A1B0GVL5 298 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 GRXCR1A8MXD5 290 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 NKRFO15226 690 aaKnown RBP eCLIP6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 NEMFO60524 1076 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 KPNA6O60684 536 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 CD4P01730 458 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 NID1P14543 1247 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 ATP2A2P16615 1042 aaKnown RBP6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 HOXA13P31271 388 aaPredicted RBP6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 CIITAP33076 1130 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 LONP1P36776 959 aaKnown RBP6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 CCL23P55773 120 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 NKX3-2P78367 333 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 ARHGAP4P98171 946 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 TYRO3Q06418 890 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 PDIA5Q14554 519 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 GRIK4Q16099 956 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 MUM1L1Q5H9M0 696 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 FAM47CQ5HY64 1035 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 CCDC183Q5T5S1 534 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 SHC4Q6S5L8 630 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 DTHD1Q6ZMT9 781 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 EEPD1Q7L9B9 569 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 FMR1NBQ8N0W7 255 aaPredicted RBP6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 BHMTQ93088 406 aa6.92□□□□□ -1.3
DEPDC4-209ENST00000550587 TIGD1Q96MW7 591 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms