RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 GTF3C2Q8WUA4 911 aaPredicted RBP22.79■■□□□ 1.24
CLIP1-211ENST00000539080 ZNF333Q96JL9 665 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 CCDC17Q96LX7 622 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 FSD1Q9BTV5 496 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 GSG1L2A8MUP6 293 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 MPHOSPH10O00566 681 aaKnown RBP22.78■■□□□ 1.24
CLIP1-211ENST00000539080 GPAA1O43292 621 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 PDE1AP54750 535 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 SEPT2Q15019 361 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 SLC44A5Q8NCS7 719 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 DYNLL2Q96FJ2 89 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 MORF4L1Q9UBU8 362 aa22.78■■□□□ 1.24
CLIP1-211ENST00000539080 ECM2O94769 699 aaPredicted RBP22.77■■□□□ 1.24
CLIP1-211ENST00000539080 CDK8P49336 464 aa22.77■■□□□ 1.24
CLIP1-211ENST00000539080 TICAM2Q86XR7 235 aa22.77■■□□□ 1.24
CLIP1-211ENST00000539080 RAET1EQ8TD07 263 aa22.77■■□□□ 1.24
CLIP1-211ENST00000539080 CYP2D7A0A087X1C5 515 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 TNPO2O14787 897 aaKnown RBP22.76■■□□□ 1.23
CLIP1-211ENST00000539080 HERVK_113P62684 666 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 PRKCZQ05513 592 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 ZMYM1Q5SVZ6 1142 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 ACER1Q8TDN7 264 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 EVI5LQ96CN4 794 aa22.76■■□□□ 1.23
CLIP1-211ENST00000539080 P2RX7Q99572 595 aaKnown RBP22.76■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L15C9J2P7 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L13C9JLJ4 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L11C9JVI0 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L18D6R9N7 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L22D6RA61 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L17D6RBQ6 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L19D6RCP7 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L20D6RJB6 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 M0R2C6 588 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 USP17L24Q0WX57 530 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 ZYXQ15942 572 aaKnown RBP22.75■■□□□ 1.23
CLIP1-211ENST00000539080 COA7Q96BR5 231 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 ROBO3Q96MS0 1386 aa22.75■■□□□ 1.23
CLIP1-211ENST00000539080 PATL2C9JE40 543 aaKnown RBP22.74■■□□□ 1.23
CLIP1-211ENST00000539080 VCAM1P19320 739 aa22.74■■□□□ 1.23
CLIP1-211ENST00000539080 GRK4P32298 578 aa22.74■■□□□ 1.23
CLIP1-211ENST00000539080 TMEM106CQ9BVX2 250 aa22.74■■□□□ 1.23
CLIP1-211ENST00000539080 LNPKQ9C0E8 428 aa22.74■■□□□ 1.23
CLIP1-211ENST00000539080 IGHDP01880 384 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 AKR1B1P15121 316 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 IRF5Q13568 498 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 CATSPERGQ6ZRH7 1159 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 CHD1LQ86WJ1 897 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 SLAIN1Q8ND83 568 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 GPRC5AQ8NFJ5 357 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 SH3TC2Q8TF17 1288 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 NACAP1Q9BZK3 213 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 SH2D4AQ9H788 454 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 ARHGEF10LQ9HCE6 1279 aa22.73■■□□□ 1.23
CLIP1-211ENST00000539080 A0A1W2PRG0 241 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 SMIM22K7EJ46 135 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 TDO2P48775 406 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 FLT3LGP49771 235 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 NUCB1Q02818 461 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 ICA1Q05084 483 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 PXYLP1Q8TE99 480 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 EPB41L4AQ9HCS5 686 aaPredicted RBP22.72■■□□□ 1.23
CLIP1-211ENST00000539080 GABRQQ9UN88 632 aa22.72■■□□□ 1.23
CLIP1-211ENST00000539080 POTEFA5A3E0 1075 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 APPP05067 770 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 B4GALNT3Q6L9W6 998 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 LBX2Q6XYB7 198 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 IFNL3Q8IZI9 196 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 LPAR1Q92633 364 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 SEC62Q99442 399 aaKnown RBP22.71■■□□□ 1.23
CLIP1-211ENST00000539080 KANSL2Q9H9L4 492 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 ZNF287Q9HBT7 754 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 RBPJLQ9UBG7 517 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 TMX2Q9Y320 296 aa22.71■■□□□ 1.23
CLIP1-211ENST00000539080 MINDY4BA8MYZ0 360 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 ERVK-9P63128 1117 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 ERVK-24P63145 666 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 OSBPL3Q9H4L5 887 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 RPAP3Q9H6T3 665 aaPredicted RBP22.7■■□□□ 1.22
CLIP1-211ENST00000539080 TXNRD2Q9NNW7 524 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 RABGAP1Q9Y3P9 1069 aa22.7■■□□□ 1.22
CLIP1-211ENST00000539080 GREB1LQ9C091 1923 aaPredicted RBP22.7■■□□□ 1.22
CLIP1-211ENST00000539080 ADCY3O60266 1144 aa22.69■■□□□ 1.22
CLIP1-211ENST00000539080 UBXN2AP68543 259 aa22.69■■□□□ 1.22
CLIP1-211ENST00000539080 SIAH1Q8IUQ4 282 aa22.69■■□□□ 1.22
CLIP1-211ENST00000539080 MKNK2Q9HBH9 465 aa22.69■■□□□ 1.22
CLIP1-211ENST00000539080 CENPFP49454 3210 aa22.68■■□□□ 1.22
CLIP1-211ENST00000539080 MAPK4P31152 587 aa22.68■■□□□ 1.22
CLIP1-211ENST00000539080 NAPBQ9H115 298 aa22.68■■□□□ 1.22
CLIP1-211ENST00000539080 HELLSQ9NRZ9 838 aa22.68■■□□□ 1.22
CLIP1-211ENST00000539080 RASA1P20936 1047 aa22.67■■□□□ 1.22
CLIP1-211ENST00000539080 PLEKHM2Q8IWE5 1019 aa22.67■■□□□ 1.22
CLIP1-211ENST00000539080 PAGR1Q9BTK6 254 aa22.67■■□□□ 1.22
CLIP1-211ENST00000539080 VCPKMTQ9H867 229 aa22.67■■□□□ 1.22
CLIP1-211ENST00000539080 SLC3A2P08195 630 aaKnown RBP22.66■■□□□ 1.22
CLIP1-211ENST00000539080 EEF2P13639 858 aaKnown RBP22.66■■□□□ 1.22
CLIP1-211ENST00000539080 CCNA1P78396 465 aa22.66■■□□□ 1.22
CLIP1-211ENST00000539080 COG2Q14746 738 aa22.66■■□□□ 1.22
CLIP1-211ENST00000539080 POTEEQ6S8J3 1075 aa22.66■■□□□ 1.22
CLIP1-211ENST00000539080 HOXC10Q9NYD6 342 aa22.66■■□□□ 1.22
CLIP1-211ENST00000539080 BIN2Q9UBW5 565 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms