RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 GDF11O95390 407 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 CYP2C8P10632 490 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 BCRP11274 1271 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 CAP1Q01518 475 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 PABPC4Q13310 644 aaKnown RBP eCLIP22.91■■□□□ 1.26
CLIP1-211ENST00000539080 ARMT1Q9H993 441 aa22.91■■□□□ 1.26
CLIP1-211ENST00000539080 ZBTB47Q9UFB7 747 aaPredicted RBP22.91■■□□□ 1.26
CLIP1-211ENST00000539080 C19orf81C9J6K1 198 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 PLCD1P51178 756 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 HMGCS2P54868 508 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 PRMT2P55345 433 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 BACE1P56817 501 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 JAG1P78504 1218 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 SDR42E1Q8WUS8 393 aa22.9■■□□□ 1.26
CLIP1-211ENST00000539080 GLRX3O76003 335 aaKnown RBP22.89■■□□□ 1.25
CLIP1-211ENST00000539080 GABPAQ06546 454 aa22.89■■□□□ 1.25
CLIP1-211ENST00000539080 LRRFIP1Q32MZ4 808 aaKnown RBP22.89■■□□□ 1.25
CLIP1-211ENST00000539080 CERKLQ49MI3 558 aaPredicted RBP22.89■■□□□ 1.25
CLIP1-211ENST00000539080 TREML2Q5T2D2 321 aa22.89■■□□□ 1.25
CLIP1-211ENST00000539080 SMCR8Q8TEV9 937 aaPredicted RBP22.89■■□□□ 1.25
CLIP1-211ENST00000539080 USP17L10C9JJH3 530 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 ZFYP08048 801 aaPredicted RBP22.88■■□□□ 1.25
CLIP1-211ENST00000539080 MTMR2Q13614 643 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 SLFNL1Q499Z3 407 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 TSHZ3Q63HK5 1081 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 DDRGK1Q96HY6 314 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 ARHGAP39Q9C0H5 1083 aa22.88■■□□□ 1.25
CLIP1-211ENST00000539080 ZSWIM8A7E2V4 1837 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 GH2P01242 217 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 MX1P20591 662 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 SHMT1P34896 483 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 AMOTL1Q8IY63 956 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 PI4K2BQ8TCG2 481 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 PUS7LQ9H0K6 701 aaKnown RBP22.87■■□□□ 1.25
CLIP1-211ENST00000539080 CABP5Q9NP86 173 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 TMOD4Q9NZQ9 345 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 SWAP70Q9UH65 585 aa22.87■■□□□ 1.25
CLIP1-211ENST00000539080 PRKAB2O43741 272 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 CHGBP05060 677 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 OSBPP22059 807 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 HOXD10P28358 340 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 PSMC4P43686 418 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 ABCB5Q2M3G0 1257 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 SHROOM1Q2M3G4 852 aaPredicted RBP22.86■■□□□ 1.25
CLIP1-211ENST00000539080 ANKRD45Q5TZF3 282 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 ARMC5Q96C12 935 aa22.86■■□□□ 1.25
CLIP1-211ENST00000539080 SALL3Q9BXA9 1300 aa22.85■■□□□ 1.25
CLIP1-211ENST00000539080 RNF113AO15541 343 aaKnown RBP22.85■■□□□ 1.25
CLIP1-211ENST00000539080 HOXA7P31268 230 aaPredicted RBP22.85■■□□□ 1.25
CLIP1-211ENST00000539080 SOX10P56693 466 aa22.85■■□□□ 1.25
CLIP1-211ENST00000539080 MLLT1Q03111 559 aaPredicted RBP22.85■■□□□ 1.25
CLIP1-211ENST00000539080 APPBP2Q92624 585 aa22.85■■□□□ 1.25
CLIP1-211ENST00000539080 SLC4A4Q9Y6R1 1079 aa22.85■■□□□ 1.25
CLIP1-211ENST00000539080 MGAMO43451 1857 aa22.85■■□□□ 1.25
CLIP1-211ENST00000539080 BAZ2AQ9UIF9 1905 aaKnown RBP22.84■■□□□ 1.25
CLIP1-211ENST00000539080 FMNL1O95466 1100 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-211ENST00000539080 GCLCP48506 637 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-211ENST00000539080 FCGRTP55899 365 aa22.84■■□□□ 1.25
CLIP1-211ENST00000539080 NBPF11Q86T75 865 aa22.84■■□□□ 1.25
CLIP1-211ENST00000539080 OTUD7AQ8TE49 926 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-211ENST00000539080 TRIM47Q96LD4 638 aa22.84■■□□□ 1.25
CLIP1-211ENST00000539080 RWDD1Q9H446 243 aaPredicted RBP22.84■■□□□ 1.25
CLIP1-211ENST00000539080 PTCH2Q9Y6C5 1203 aa22.84■■□□□ 1.25
CLIP1-211ENST00000539080 CTGFP29279 349 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 RAB3GAP1Q15042 981 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 FAM110CQ1W6H9 321 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 C12orf60Q5U649 245 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 GIMAP6Q6P9H5 292 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 USP17L2Q6R6M4 530 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 C12orf42Q96LP6 360 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 STRBPQ96SI9 672 aaKnown RBP22.83■■□□□ 1.25
CLIP1-211ENST00000539080 ASCC2Q9H1I8 757 aaPredicted RBP22.83■■□□□ 1.25
CLIP1-211ENST00000539080 SRRDQ9UH36 339 aa22.83■■□□□ 1.25
CLIP1-211ENST00000539080 MYH8P13535 1937 aa22.82■■□□□ 1.24
CLIP1-211ENST00000539080 USP14P54578 494 aa22.82■■□□□ 1.24
CLIP1-211ENST00000539080 SLC9C1Q4G0N8 1177 aa22.82■■□□□ 1.24
CLIP1-211ENST00000539080 ARPP21Q9UBL0 812 aaPredicted RBP22.82■■□□□ 1.24
CLIP1-211ENST00000539080 STAP2Q9UGK3 403 aa22.82■■□□□ 1.24
CLIP1-211ENST00000539080 RBBP6Q7Z6E9 1792 aaKnown RBP22.81■■□□□ 1.24
CLIP1-211ENST00000539080 USP17L12C9JPN9 530 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 USP17L21D6R901 530 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 CYP2D6P10635 497 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 GNAT2P19087 354 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 IRX3P78415 501 aaPredicted RBP22.81■■□□□ 1.24
CLIP1-211ENST00000539080 SMC5Q8IY18 1101 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 OSBP2Q969R2 916 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 FEZ1Q99689 392 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 KIAA1683Q9H0B3 1180 aa22.81■■□□□ 1.24
CLIP1-211ENST00000539080 EVX2Q03828 476 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 ANKRD13CQ8N6S4 541 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 EXOC6Q8TAG9 804 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 EMILIN3Q9NT22 766 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 SUPT16HQ9Y5B9 1047 aaKnown RBP22.8■■□□□ 1.24
CLIP1-211ENST00000539080 HTTP42858 3142 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 MYPNQ86TC9 1320 aa22.8■■□□□ 1.24
CLIP1-211ENST00000539080 GUCY1A2P33402 732 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 SBK1Q52WX2 424 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 CTR9Q6PD62 1173 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 TMEM179Q6ZVK1 233 aa22.79■■□□□ 1.24
CLIP1-211ENST00000539080 C16orf86Q6ZW13 317 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms