RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 PDE6DO43924 150 aa12.84□□□□□ -0.35
CLIP1-211ENST00000539080 MEF2BQ02080 365 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-211ENST00000539080 FAM74A4Q5TZK3 123 aa12.84□□□□□ -0.35
CLIP1-211ENST00000539080 SMIM12Q96EX1 92 aa12.84□□□□□ -0.35
CLIP1-211ENST00000539080 GAGE12JA6NER3 117 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 CDK2AP2O75956 126 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 OR5AL1P0C617 328 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 RPL19P84098 196 aaKnown RBP12.83□□□□□ -0.36
CLIP1-211ENST00000539080 GAGE1Q13065 139 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 GAGE4Q13068 117 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 GAGE5Q13069 117 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 GAGE13Q4V321 117 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 PRR27Q6MZM9 219 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 C14orf178Q8N769 122 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-211ENST00000539080 DERL1Q9BUN8 251 aa12.83□□□□□ -0.36
CLIP1-211ENST00000539080 SSBP4Q9BWG4 385 aaPredicted RBP12.83□□□□□ -0.36
CLIP1-211ENST00000539080 A0A087WWC5 75 aa12.82□□□□□ -0.36
CLIP1-211ENST00000539080 A0A087WWL8 130 aa12.82□□□□□ -0.36
CLIP1-211ENST00000539080 SNAI2O43623 268 aa12.82□□□□□ -0.36
CLIP1-211ENST00000539080 TAGLN2P37802 199 aaKnown RBP12.82□□□□□ -0.36
CLIP1-211ENST00000539080 KRTAP10-2P60368 255 aa12.82□□□□□ -0.36
CLIP1-211ENST00000539080 C9orf62Q8N4C0 152 aa12.82□□□□□ -0.36
CLIP1-211ENST00000539080 TRBV10-1A0A0K0K1A3 114 aa12.81□□□□□ -0.36
CLIP1-211ENST00000539080 IBA57-AS1B1ANH7 110 aa12.81□□□□□ -0.36
CLIP1-211ENST00000539080 BCL2P10415 239 aa12.81□□□□□ -0.36
CLIP1-211ENST00000539080 CENPWQ5EE01 88 aa12.81□□□□□ -0.36
CLIP1-211ENST00000539080 PGPEP1Q9NXJ5 209 aa12.81□□□□□ -0.36
CLIP1-211ENST00000539080 LAGE3Q14657 143 aa12.8□□□□□ -0.36
CLIP1-211ENST00000539080 OR10AG1Q8NH19 301 aa12.8□□□□□ -0.36
CLIP1-211ENST00000539080 VAX2Q9UIW0 290 aa12.8□□□□□ -0.36
CLIP1-211ENST00000539080 hCG_2014768A0A024R1R8 64 aa12.79□□□□□ -0.36
CLIP1-211ENST00000539080 GNG4P50150 75 aa12.79□□□□□ -0.36
CLIP1-211ENST00000539080 CDPF1Q6NVV7 123 aa12.79□□□□□ -0.36
CLIP1-211ENST00000539080 Q9UF83 564 aa12.79□□□□□ -0.36
CLIP1-211ENST00000539080 A0A087WTM6 91 aa12.78□□□□□ -0.36
CLIP1-211ENST00000539080 IGLV2-8P01709 118 aa12.78□□□□□ -0.36
CLIP1-211ENST00000539080 RAB4BP61018 213 aa12.78□□□□□ -0.36
CLIP1-211ENST00000539080 SPANXN1Q5VSR9 72 aa12.78□□□□□ -0.36
CLIP1-211ENST00000539080 DAZAP1Q96EP5 407 aaKnown RBP12.78□□□□□ -0.36
CLIP1-211ENST00000539080 BIN3Q9NQY0 253 aa12.78□□□□□ -0.36
CLIP1-211ENST00000539080 IGHV3-30P01768 117 aa12.77□□□□□ -0.37
CLIP1-211ENST00000539080 IGHV3-33P01772 117 aa12.77□□□□□ -0.37
CLIP1-211ENST00000539080 IGHV3-30-3P0DP02 117 aa12.77□□□□□ -0.37
CLIP1-211ENST00000539080 IGHV3-30-5P0DP03 117 aa12.77□□□□□ -0.37
CLIP1-211ENST00000539080 RPS20P60866 119 aaKnown RBP12.77□□□□□ -0.37
CLIP1-211ENST00000539080 RPL36AP83881 106 aaKnown RBP12.77□□□□□ -0.37
CLIP1-211ENST00000539080 RPL36ALQ969Q0 106 aaKnown RBP12.77□□□□□ -0.37
CLIP1-211ENST00000539080 MED9Q9NWA0 146 aa12.77□□□□□ -0.37
CLIP1-211ENST00000539080 TRBV7-3A0A075B6L6 115 aa12.76□□□□□ -0.37
CLIP1-211ENST00000539080 RAB19A4D1S5 217 aa12.76□□□□□ -0.37
CLIP1-211ENST00000539080 C19orf71A6NCJ1 209 aa12.76□□□□□ -0.37
CLIP1-211ENST00000539080 OR10G8Q8NGN5 311 aa12.76□□□□□ -0.37
CLIP1-211ENST00000539080 RYR1P21817 5038 aa12.75□□□□□ -0.37
CLIP1-211ENST00000539080 PSCAO43653 123 aa12.75□□□□□ -0.37
CLIP1-211ENST00000539080 BLOC1S1P78537 153 aa12.75□□□□□ -0.37
CLIP1-211ENST00000539080 ZNF56Q15929 161 aa12.75□□□□□ -0.37
CLIP1-211ENST00000539080 LRP1BQ9NZR2 4599 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 TRBV20OR9-2A0A075B6H5 130 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 XKRY2A2RUG3 117 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 UBE2D3P61077 147 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 UBE2D2P62837 147 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 TOR2AQ5JU69 321 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 OR2D3Q8NGH3 330 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 AP1S3Q96PC3 154 aa12.74□□□□□ -0.37
CLIP1-211ENST00000539080 P01737 135 aa12.73□□□□□ -0.37
CLIP1-211ENST00000539080 IGLC6P0CF74 106 aa12.73□□□□□ -0.37
CLIP1-211ENST00000539080 FER1L6-AS1Q8NA97 138 aa12.73□□□□□ -0.37
CLIP1-211ENST00000539080 TRAV8-3A0A0A6YYJ7 113 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 SMIM17P0DL12 118 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 ALKAL2Q6UX46 152 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 TM2D2Q9BX73 214 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 Q9HAA7 133 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 URGCP-MRPS24S4R325 110 aa12.72□□□□□ -0.37
CLIP1-211ENST00000539080 MUC21A0A0G2JKD1 596 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 MUC21A0A140T8X8 626 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 F2Z2F3 143 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 CACNG7P62955 275 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 NIT1Q86X76 327 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-211ENST00000539080 NEXN-AS1Q8NBZ9 246 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 LYPD6BQ8NI32 183 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 CHCHD7Q9BUK0 85 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 KIF25-AS1Q9Y6Z4 181 aa12.71□□□□□ -0.37
CLIP1-211ENST00000539080 LRCOL1A6NCL2 159 aa12.7□□□□□ -0.38
CLIP1-211ENST00000539080 GZMBP10144 247 aa12.7□□□□□ -0.38
CLIP1-211ENST00000539080 TPPP3Q9BW30 176 aa12.7□□□□□ -0.38
CLIP1-211ENST00000539080 DNAH5Q8TE73 4624 aa12.69□□□□□ -0.38
CLIP1-211ENST00000539080 F5H697 171 aa12.69□□□□□ -0.38
CLIP1-211ENST00000539080 TMEM250H0YL14 139 aa12.69□□□□□ -0.38
CLIP1-211ENST00000539080 DAZ4Q86SG3 579 aaKnown RBP12.69□□□□□ -0.38
CLIP1-211ENST00000539080 Q8N3U1 123 aa12.69□□□□□ -0.38
CLIP1-211ENST00000539080 DAZ3Q9NR90 486 aaKnown RBP12.69□□□□□ -0.38
CLIP1-211ENST00000539080 RBFOX3A6NFN3 312 aa12.68□□□□□ -0.38
CLIP1-211ENST00000539080 SSTP61278 116 aa12.68□□□□□ -0.38
CLIP1-211ENST00000539080 KCNIP4Q6PIL6 250 aa12.68□□□□□ -0.38
CLIP1-211ENST00000539080 NTN5Q8WTR8 489 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-211ENST00000539080 KRTAP17-1Q9BYP8 105 aa12.68□□□□□ -0.38
CLIP1-211ENST00000539080 COX11Q9Y6N1 276 aa12.68□□□□□ -0.38
CLIP1-211ENST00000539080 TRBV6-8A0A0A6YYG3 113 aa12.67□□□□□ -0.38
CLIP1-211ENST00000539080 ELOBQ15370 118 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms