RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 A0A0J9YY99 117 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 TRBV10-3A0A0K0K1G6 114 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 A0A1W2PQD3 144 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 IQCF6A8MYZ5 107 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 H7BZZ5 65 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 K7EMI3 77 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 LST1O00453 97 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 LINC00271P0C7V0 271 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 RNASE2P10153 161 aaKnown RBP3.16□□□□□ -1.9
VPS39-212ENST00000570023 ZNF137PP52743 207 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 CRIP2P52943 208 aaPredicted RBP3.16□□□□□ -1.9
VPS39-212ENST00000570023 DSCR9P59020 149 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 FAM222AQ5U5X8 452 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 GUSBP11Q6P575 273 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 FOXL2NBQ6ZUU3 175 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 WDR86Q86TI4 376 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 ZNF329Q86UD4 541 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 MKXQ8IYA7 352 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 TMEM75Q8N9X5 138 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 C11orf45Q8TAV5 145 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 UBALD1Q8TB05 177 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 ZNF714Q96N38 554 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 RPP25Q9BUL9 199 aaKnown RBP3.16□□□□□ -1.9
VPS39-212ENST00000570023 TIMM21Q9BVV7 248 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 PHPT1Q9NRX4 125 aaPredicted RBP3.16□□□□□ -1.9
VPS39-212ENST00000570023 MOB4Q9Y3A3 225 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 VWA8A3KMH1 1905 aa3.16□□□□□ -1.9
VPS39-212ENST00000570023 NUP210Q8TEM1 1887 aaPredicted RBP3.16□□□□□ -1.9
VPS39-212ENST00000570023 GREB1Q4ZG55 1949 aa3.15□□□□□ -1.9
VPS39-212ENST00000570023 DOCK4Q8N1I0 1966 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 TRAV13-2A0A0B4J235 113 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 TRGV8A0A0C4DH27 118 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 LOC101059948A0A1B0GTJ6 334 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 TMEM223A0PJW6 202 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 ZNF815PA8K554 130 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 K7EMT4 169 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 UBE2L6O14933 153 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 NXPH4O95158 308 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 COX6B1P14854 86 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 CKS2P33552 79 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 RHOHQ15669 191 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 GFRALQ6UXV0 394 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 MIR17HGQ75NE6 70 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 PHF5AQ7RTV0 110 aaKnown RBP3.15□□□□□ -1.91
VPS39-212ENST00000570023 Q8N2B8 174 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 SMCR5Q8TEV8 140 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 TSACCQ96A04 125 aaPredicted RBP3.15□□□□□ -1.91
VPS39-212ENST00000570023 EEF1AKMT3Q96AZ1 226 aa3.15□□□□□ -1.91
VPS39-212ENST00000570023 ZNF71Q9NQZ8 489 aaPredicted RBP3.15□□□□□ -1.91
VPS39-212ENST00000570023 MRPL35Q9NZE8 188 aaKnown RBP3.15□□□□□ -1.91
VPS39-212ENST00000570023 MYO16Q9Y6X6 1858 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 TRAV7A0A075B6U4 112 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 IGHV4-28A0A0C4DH34 117 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 LOC389332A0A1B0GUA5 103 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 D6R8Y8 96 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 SMKR1H3BMG3 65 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 CCL21O00585 134 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 COX7A2P2O60397 106 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 PRSS2P07478 247 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 DEFA4P12838 97 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 RBM3P98179 157 aaKnown RBP3.14□□□□□ -1.91
VPS39-212ENST00000570023 EIF4EBP1Q13541 118 aaPredicted RBP3.14□□□□□ -1.91
VPS39-212ENST00000570023 PLGLAQ15195 96 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 ZNF826PQ6ZT77 177 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 C18orf65Q6ZTR6 163 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 WFDC5Q8TCV5 224 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 RNASE6Q93091 150 aaKnown RBP3.14□□□□□ -1.91
VPS39-212ENST00000570023 Q9H3A6 140 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 UBE2D4Q9Y2X8 147 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 PLXNB2O15031 1838 aa3.14□□□□□ -1.91
VPS39-212ENST00000570023 PLXNA2O75051 1894 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 ANAPC1Q9H1A4 1944 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 IGKV1-6A0A0C4DH72 117 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 A0A0J9YX75 114 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 TMEM202A6NGA9 273 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 IGHV4-39P01824 125 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 CD24P25063 80 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 Q1RN00 199 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 Q1T7F1 81 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 NSUN5P1Q3KNT7 163 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 MRPL51Q4U2R6 128 aaKnown RBP3.13□□□□□ -1.91
VPS39-212ENST00000570023 ZNF542PQ5EBM4 170 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.13□□□□□ -1.91
VPS39-212ENST00000570023 SFTA2Q6UW10 78 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 LYPD5Q6UWN5 251 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 DYNAPQ8N1N2 210 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 DYNLRB2Q8TF09 96 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 ITLN1Q8WWA0 313 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 C6orf106Q9H6K1 298 aaPredicted RBP3.13□□□□□ -1.91
VPS39-212ENST00000570023 SCN5AQ14524 2016 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 TRPM6Q9BX84 2022 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 COL4A1P02462 1669 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 PLXNB3Q9ULL4 1909 aa3.13□□□□□ -1.91
VPS39-212ENST00000570023 DOCK8Q8NF50 2099 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 IGLV3-32A0A0A0MS00 114 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 TMEM30CPA0ZSE6 113 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 FAM223BA6NKX1 122 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 C8orf87E5RJ46 101 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 M0R378 163 aa3.12□□□□□ -1.91
VPS39-212ENST00000570023 WNT9BO14905 357 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms