RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 RPS11P62280 158 aaKnown RBP eCLIP5.63□□□□□ -1.51
NIPBL-208ENST00000514335 LINC00173Q6ZV60 143 aa5.63□□□□□ -1.51
NIPBL-208ENST00000514335 OVOL2Q9BRP0 275 aa5.63□□□□□ -1.51
NIPBL-208ENST00000514335 FAM208BQ5VWN6 2430 aa5.63□□□□□ -1.51
NIPBL-208ENST00000514335 BPTFQ12830 3046 aa5.63□□□□□ -1.51
NIPBL-208ENST00000514335 TRAV41A0A0B4J266 112 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 CXorf51AA0A1B0GTR3 108 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 ZNF136P52737 540 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 CIRBPQ14011 172 aaKnown RBP5.62□□□□□ -1.51
NIPBL-208ENST00000514335 ORMDL2Q53FV1 153 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 C9orf57Q5W0N0 161 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 RPP25LQ8N5L8 163 aaKnown RBP5.62□□□□□ -1.51
NIPBL-208ENST00000514335 CD177Q8N6Q3 437 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 RFESDQ8TAC1 157 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 PGLYRP4Q96LB8 373 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 NXT2Q9NPJ8 142 aaKnown RBP5.62□□□□□ -1.51
NIPBL-208ENST00000514335 TET1Q8NFU7 2136 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 IZUMO1RA6ND01 250 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 J3QT63 122 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 RBMY1CP0DJD4 496 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 ERCC8Q13216 396 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 MSMPQ1L6U9 139 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 FAM120AOSQ5T036 256 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 LGALS9CQ6DKI2 356 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 TMEM75Q8N9X5 138 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 TMEM158Q8WZ71 300 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 NMNAT3Q96T66 252 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 EPDR1Q9UM22 224 aa5.62□□□□□ -1.51
NIPBL-208ENST00000514335 RAI1Q7Z5J4 1906 aaPredicted RBP5.62□□□□□ -1.51
NIPBL-208ENST00000514335 J3QL48 77 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 SS18L1O75177 396 aaPredicted RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 RPL34P49207 117 aaKnown RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 MRPS21P82921 87 aaKnown RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 PLPP4Q5VZY2 271 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 ZNF584Q8IVC4 421 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 OARD1Q9Y530 152 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 SERP1Q9Y6X1 66 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 MUC22E2RYF6 1773 aaPredicted RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 TRAV17A0A0B4J275 112 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 MGST3O14880 152 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 PDCD6O75340 191 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 HBG2P69892 147 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 ZNF56Q15929 161 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 BEAN1Q3B7T3 259 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 CLLU1OSQ5K130 101 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 UPK3BQ9BT76 320 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 ZFHX2Q9C0A1 2572 aaPredicted RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 TRAV8-4A0A0B4J246 113 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 C4orf51C9J302 202 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 SSBP1Q04837 148 aaKnown RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 PVRIGQ6DKI7 326 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 TREML4Q6UXN2 200 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 FAM19A3Q7Z5A8 133 aa5.61□□□□□ -1.51
NIPBL-208ENST00000514335 H1FXQ92522 213 aaKnown RBP5.61□□□□□ -1.51
NIPBL-208ENST00000514335 TPRP12270 2363 aaKnown RBP5.6□□□□□ -1.51
NIPBL-208ENST00000514335 PGPA6NDG6 321 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 AQP1P29972 269 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 TMEM155Q4W5P6 130 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 SPANXN4Q5MJ08 99 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 SBSPONQ8IVN8 264 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 LINC00474Q9P2X8 69 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 MPDZO75970 2070 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 NUP214P35658 2090 aaPredicted RBP5.6□□□□□ -1.51
NIPBL-208ENST00000514335 SCGB1C2P0DMR2 95 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 FXYD6P3P58550 94 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 OR5C1Q8NGR4 320 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 NT5CQ8TCD5 201 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 ZNF286AQ9HBT8 521 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 CALYQ9NYX4 217 aa5.6□□□□□ -1.51
NIPBL-208ENST00000514335 ACACBO00763 2458 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 MED13Q9UHV7 2174 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 GPR179Q6PRD1 2367 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 IGKV1D-43A0A0B4J1Z2 117 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 H3BVH4 76 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 MGST1P10620 155 aaKnown RBP5.59□□□□□ -1.51
NIPBL-208ENST00000514335 HLA-DOBP13765 273 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 CD59P13987 128 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 SFTPDP35247 375 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 PSMB2P49721 201 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 RYBPQ8N488 228 aaPredicted RBP5.59□□□□□ -1.51
NIPBL-208ENST00000514335 TMEM52Q8NDY8 209 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 MDFIQ99750 246 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 SPANXDQ9BXN6 97 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 IMUPQ9GZP8 106 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 THADAQ6YHU6 1953 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 BRWD1Q9NSI6 2320 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 CD52P31358 61 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 HMGA2P52926 109 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 FGFBP3Q8TAT2 258 aa5.59□□□□□ -1.51
NIPBL-208ENST00000514335 NOTCH4Q99466 2003 aa5.59□□□□□ -1.52
NIPBL-208ENST00000514335 MAP1BP46821 2468 aaKnown RBP5.58□□□□□ -1.52
NIPBL-208ENST00000514335 MRPS12O15235 138 aaKnown RBP5.58□□□□□ -1.52
NIPBL-208ENST00000514335 KTN1-AS1Q86SY8 53 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 MOB4Q9Y3A3 225 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 CACNA1HO95180 2353 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 DIDO1Q9BTC0 2240 aaKnown RBP5.58□□□□□ -1.52
NIPBL-208ENST00000514335 ZNF823P16415 610 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 FAM222AQ5U5X8 452 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 COX8CQ7Z4L0 72 aa5.58□□□□□ -1.52
NIPBL-208ENST00000514335 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms