RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 LDLRAD4O15165 306 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 TBR1Q16650 682 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 IMMP2LQ96T52 175 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 TMEM70Q9BUB7 260 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 IGKV1-12A0A0C4DH73 117 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 DPRXA6NFQ7 191 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 IGKV1D-12P01611 117 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 HOXA5P20719 270 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 SMAGPQ0VAQ4 97 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 WDR82Q6UXN9 313 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 LHFPL1Q86WI0 220 aa12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 RNASEH2CQ8TDP1 164 aaKnown RBP12.85□□□□□ -0.35
ARHGEF40-202ENST00000553709 RBFOX2O43251 390 aaKnown RBP eCLIP12.84□□□□□ -0.355e-12■■■□□ 17.9
ARHGEF40-202ENST00000553709 GPX1P07203 203 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 RNFT1Q5M7Z0 435 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 ZNF324BQ6AW86 544 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 C17orf82Q86X59 251 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 TMEM105Q8N8V8 129 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 PINLYPA6NC86 204 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 ZNF324O75467 553 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 LY6EQ16553 131 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 OR52E5Q8NH55 327 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 AUP1Q9Y679 476 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 TRAV9-1A0A075B6T8 112 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 SAA2-SAA4A0A096LPE2 208 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 CLPSP04118 112 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 SAA2P0DJI9 122 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 GCSHP23434 173 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 NABP1Q96AH0 204 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 PARD6GQ9BYG4 376 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 FOXI3A8MTJ6 420 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 C17orf100A8MU93 164 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 NPIPB6E9PJ23 425 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 CRXO43186 299 aaPredicted RBP12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 DNLZQ5SXM8 178 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 TMEM144Q7Z5S9 345 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 WFDC1Q9HC57 220 aa12.84□□□□□ -0.35
ARHGEF40-202ENST00000553709 ARHGEF17Q96PE2 2063 aaPredicted RBP12.83□□□□□ -0.35
ARHGEF40-202ENST00000553709 RAMP3O60896 148 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 FOXH1O75593 365 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 GATA2P23769 480 aaPredicted RBP12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 RAB37Q96AX2 223 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 LINC00587B1AMM8 73 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 VOPP1Q96AW1 172 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 KLHDC3Q9BQ90 382 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 GSN-AS1Q9NRJ2 163 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 NTN3O00634 580 aaPredicted RBP12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 SAA1P0DJI8 122 aaPredicted RBP12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 MORN2Q502X0 79 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 TEX45Q8NA69 505 aa12.83□□□□□ -0.36
ARHGEF40-202ENST00000553709 FREM3P0C091 2139 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGKV3D-15A0A087WSY6 115 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 UPK2O00526 184 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 PDLIM4P50479 330 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 SCN8AQ9UQD0 1980 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 C15orf61A6NNL5 157 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 ATP5J2P56134 94 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 RTN4RL2Q86UN3 420 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 GPR82Q96P67 336 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 FOXA2Q9Y261 457 aaPredicted RBP12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 TBL2Q9Y4P3 447 aaKnown RBP12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 NUP210Q8TEM1 1887 aaPredicted RBP12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 TICRRQ7Z2Z1 1910 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 MDC1Q14676 2089 aaKnown RBP12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 FAM166AQ6J272 317 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 HEATR5BQ9P2D3 2071 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 ZNF318Q5VUA4 2279 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 CD55P08174 381 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 TAS2R60P59551 318 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 HIST1H4GQ99525 98 aa12.82□□□□□ -0.36
ARHGEF40-202ENST00000553709 SNRNP200O75643 2136 aaKnown RBP12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGKV1D-33P01593 117 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGKV1-33P01594 117 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 SUPT4H1P63272 117 aaKnown RBP12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 GGNQ86UU5 652 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 FMC1Q96HJ9 113 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGHV3OR16-13A0A075B7E8 117 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGHV3-74A0A0B4J1X5 117 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 DLX6P56179 175 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 DDB2Q92466 427 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 ABHD17AQ96GS6 310 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 TRBV20OR9-2A0A075B6H5 130 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 SRSF7Q16629 238 aaKnown RBP eCLIP12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 S4R3C0 116 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 C7orf71A4D174 169 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 CCL3L1P16619 93 aa12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 RPP21Q9H633 154 aaKnown RBP12.81□□□□□ -0.36
ARHGEF40-202ENST00000553709 LOC107984156A0A0G2JMH3 177 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGKV3-15P01624 115 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 CCL20P78556 96 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 ARL17AQ8IVW1 177 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 PMCHL2Q9BQD1 86 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 KLK15Q9H2R5 256 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 ERASQ7Z444 233 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 C21orf62Q9NYP8 219 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 SOX21Q9Y651 276 aaPredicted RBP12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 CACNA1DQ01668 2161 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 A0A1B0GUT8 65 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 C1QTNF9BB2RNN3 333 aa12.8□□□□□ -0.36
ARHGEF40-202ENST00000553709 IGHV3-23P01764 117 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms