RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 MINOS1-NBL1R4GNA1 71 aa12.97□□□□□ -0.33
HDDC2-201ENST00000318787 KBTBD11-OT1A0A1B0GTJ5 212 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 PIN1P1O15428 100 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 GPX5O75715 221 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 CRTAPO75718 401 aaPredicted RBP12.96□□□□□ -0.33
HDDC2-201ENST00000318787 MYF6P23409 242 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 CD24P25063 80 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 SSTR5P35346 364 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 GNG10P50151 68 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 BDH1Q02338 343 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 ACSM3Q53FZ2 586 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 RSBN1Q5VWQ0 802 aaPredicted RBP12.96□□□□□ -0.33
HDDC2-201ENST00000318787 RTN4RL2Q86UN3 420 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 C11orf44Q8N8P7 122 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 UBALD1Q8TB05 177 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 CCDC107Q8WV48 283 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 THRSPQ92748 146 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 UFD1Q92890 307 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 TMEM203Q969S6 136 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 FAM46BQ96A09 425 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 CITED1Q99966 193 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 ZNF696Q9H7X3 374 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 DPM3Q9P2X0 92 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 PITPNC1Q9UKF7 332 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 TRRAPQ9Y4A5 3859 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 MGAM2Q2M2H8 2515 aa12.96□□□□□ -0.33
HDDC2-201ENST00000318787 VGLL3A8MV65 326 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 RGS10O43665 173 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 VSIG10L2P0DP72 767 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 ARHGDIBP52566 201 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 PRRX1P54821 245 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 SLC35A2P78381 396 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 HABP2Q14520 560 aaPredicted RBP12.95□□□□□ -0.34
HDDC2-201ENST00000318787 MPV17LQ2QL34 196 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 PRR31Q5SQ13 230 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 UTF1Q5T230 341 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 LIPKQ5VXJ0 399 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 HIST2H2BDQ6DRA6 164 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 CCBE1Q6UXH8 406 aaPredicted RBP12.95□□□□□ -0.34
HDDC2-201ENST00000318787 LIAT1Q6ZQX7 453 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 LINC00596Q86U02 117 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 NKAIN3Q8N8D7 197 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 KIRREL1Q96J84 757 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 ANKRD60Q9BZ19 345 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 SELENOIQ9C0D9 397 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 IDI2-AS1Q9NZ38 188 aa12.95□□□□□ -0.34
HDDC2-201ENST00000318787 TMEM30CPA0ZSE6 113 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 LEUTXA8MZ59 168 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 M0QZ24 198 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 TIMM23O14925 209 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 PEX14O75381 377 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 CD1AP06126 327 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 CEACAM3P40198 252 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 VHLP40337 213 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 KCNJ3P48549 501 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 HSPA13P48723 471 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 GPR50Q13585 617 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 HLA-DRB5Q30154 266 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 NHLRC3Q5JS37 347 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 TREML4Q6UXN2 200 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 CEACAM19Q7Z692 300 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 MS4A15Q8N5U1 240 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 Q8NFD4 153 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 LSM2Q9Y333 95 aaKnown RBP12.94□□□□□ -0.34
HDDC2-201ENST00000318787 A6NDX4 124 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 MCRIP1C9JLW8 97 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 AIPO00170 330 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 IL1AP01583 271 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 MGMTP16455 207 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 MAP2K4P45985 399 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 RNLSQ5VYX0 342 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 PRR18Q8N4B5 295 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 KLHDC1Q8N7A1 406 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 OR9G1Q8NH87 305 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 CAPSLQ8WWF8 208 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 RANBP3Q9H6Z4 567 aaPredicted RBP12.94□□□□□ -0.34
HDDC2-201ENST00000318787 FBLN5Q9UBX5 448 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 PEX16Q9Y5Y5 336 aa12.94□□□□□ -0.34
HDDC2-201ENST00000318787 A0A1W2PPE3 182 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 BUB1B-PAK6H3BSN5 160 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 H3BUI4 141 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 ATP6V1G2O95670 118 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 IGLV1-47P01700 117 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 CD34P28906 385 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 BRS3P32247 399 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 KIR2DS4P43632 304 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 HSD17B12Q53GQ0 312 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 NKAPLQ5M9Q1 402 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 RAB12Q6IQ22 244 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 Q6ZTK2 550 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 TMEM104Q8NE00 496 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 OR4K15Q8NH41 348 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 TOMM40LQ969M1 308 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 ARL11Q969Q4 196 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 RPEQ96AT9 228 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 MMP28Q9H239 520 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 IFT22Q9H7X7 185 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 ETAA1Q9NY74 926 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 TRAPPC2LQ9UL33 140 aa12.93□□□□□ -0.34
HDDC2-201ENST00000318787 AMMECR1Q9Y4X0 333 aaPredicted RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 149.7 ms