RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 J3QW42 95 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 MRPL49Q13405 166 aaKnown RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 RSU1Q15404 277 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 GUSBP1Q15486 140 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 PRR30Q53SZ7 412 aaPredicted RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 RNASE10Q5GAN6 216 aaKnown RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 GCNT2Q8N0V5 402 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 OR51S1Q8NGJ8 323 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 SLC25A21Q9BQT8 299 aaPredicted RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 REPIN1Q9BWE0 567 aaKnown RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 TM2D1Q9BX74 207 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 ANKRD11Q6UB99 2663 aaPredicted RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 TMEM8BA6NDV4 472 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 IL5P05113 134 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 HOXB1P14653 301 aaPredicted RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 HOXC12P31275 282 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 ZP1P60852 638 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 ACSF3Q4G176 576 aaPredicted RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 Q5BKY6 102 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 CNEP1R1Q8N9A8 125 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 PIGCQ92535 297 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 SNRNP40Q96DI7 357 aaKnown RBP14.57□□□□□ -0.08
LDLR-206ENST00000557958 PRRT1Q99946 306 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 PRORYQ9H606 182 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.57□□□□□ -0.08
LDLR-206ENST00000557958 TUBD1Q9UJT1 453 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 FLVCR2Q9UPI3 526 aa14.57□□□□□ -0.08
LDLR-206ENST00000557958 ZNF503-AS2A6NEH8 195 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 SERPINE3A8MV23 424 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 CREBL2O60519 120 aaPredicted RBP14.56□□□□□ -0.08
LDLR-206ENST00000557958 AMY2AP04746 511 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 GK2Q14410 553 aaPredicted RBP14.56□□□□□ -0.08
LDLR-206ENST00000557958 PPA1Q15181 289 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 TBC1D28Q2M2D7 210 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 ACTBL2Q562R1 376 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 DMRTC1Q5HYR2 192 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 CRIP3Q6Q6R5 217 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 GLDNQ6ZMI3 551 aaPredicted RBP14.56□□□□□ -0.08
LDLR-206ENST00000557958 C3P1Q6ZMU1 363 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 MOB3CQ70IA8 216 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 OR4D10Q8NGI6 311 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 NUDCD2Q8WVJ2 157 aa14.56□□□□□ -0.08
LDLR-206ENST00000557958 DVL3Q92997 716 aaPredicted RBP14.56□□□□□ -0.08
LDLR-206ENST00000557958 NPDC1Q9NQX5 325 aaPredicted RBP14.56□□□□□ -0.08
LDLR-206ENST00000557958 A0A0A6YYD4 124 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 SNRPGP15A8MWD9 76 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 SOCS1O15524 211 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 RLN1P04808 185 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 ANXA3P12429 323 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 LY6DQ14210 128 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 FCN2Q15485 313 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 KRTCAP3Q53RY4 240 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 NSUN5P2Q63ZY6 315 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 C1QL2Q7Z5L3 287 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 MDP1Q86V88 176 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 KDF1Q8NAX2 398 aaPredicted RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 C1orf162Q8NEQ5 155 aaPredicted RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 SLC30A7Q8NEW0 376 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 PXT1Q8NFP0 134 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 OR56B2PQ8NGI1 322 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 CCDC107Q8WV48 283 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 MRPS24Q96EL2 167 aaKnown RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 PAPOLGQ9BWT3 736 aaKnown RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 ASF1BQ9NVP2 202 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 ELF5Q9UKW6 265 aaPredicted RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 A0A1W2PP11 408 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 UBE2QL1A1L167 161 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 WIPF3A6NGB9 483 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 MFNGO00587 321 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 CCL2P13500 99 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 BLVRBP30043 206 aaPredicted RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 PTGER4P35408 488 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 ARFRP1Q13795 201 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 ST3GAL2Q16842 350 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 EIF2S3LQ2VIR3 472 aaKnown RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 IDO2Q6ZQW0 420 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 BPIFB2Q8N4F0 458 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 C17orf50Q8WW18 174 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 IL36GQ9NZH8 169 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 EIF3KQ9UBQ5 218 aaKnown RBP14.55□□□□□ -0.08
LDLR-206ENST00000557958 ZNF222Q9UK12 451 aa14.55□□□□□ -0.08
LDLR-206ENST00000557958 SPENQ96T58 3664 aaKnown RBP14.54□□□□□ -0.08
LDLR-206ENST00000557958 CA11O75493 328 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 CST4P01036 141 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 IFNA6P05013 189 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 FCER2P06734 321 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 IGHV1-2P23083 117 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 MPZP25189 248 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 PER3P56645 1201 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 PLAC9Q5JTB6 97 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 ASCL4Q6XD76 172 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 ZNF767PQ75MW2 155 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 CD163Q86VB7 1156 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 C9orf106Q8NAJ2 232 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 BEST4Q8NFU0 473 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 OR10K1Q8NGX5 313 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 ARHGAP5-AS1Q96IT6 56 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 BEX1Q9HBH7 125 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 SLC2A8Q9NY64 477 aa14.54□□□□□ -0.08
LDLR-206ENST00000557958 ZNF850A8MQ14 1090 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms