RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 GPR173Q9NS66 373 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 KCNN3Q9UGI6 736 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ING4Q9UNL4 249 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 IGF2RP11717 2491 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 MEIS3P1A6NDR6 274 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZNF736B4DX44 427 aaPredicted RBP14.61□□□□□ -0.07
LDLR-206ENST00000557958 CCNOP22674 350 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 APLNRP35414 380 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 RBP2P50120 134 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 CD83Q01151 205 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZNF92Q03936 586 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 MAB21L1Q13394 359 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 MEF2DQ14814 521 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 TMEM255AQ5JRV8 349 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 METTL11BQ5VVY1 283 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 CD276Q5ZPR3 534 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 TMEM42Q69YG0 159 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 FTMTQ8N4E7 242 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 WNT2BQ93097 391 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 PIGTQ969N2 578 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 RAB3CQ96E17 227 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZMAT3Q9HA38 289 aaKnown RBP14.61□□□□□ -0.07
LDLR-206ENST00000557958 IFT46Q9NQC8 304 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 LOC100509620A0A075B734 347 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 A0A1B0GUH1 482 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 AHRRA9YTQ3 701 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 RAB3DO95716 219 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 IL18BPO95998 194 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 C1QBP02746 253 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 CD3DP04234 171 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 FOXG1P55316 489 aaPredicted RBP14.6□□□□□ -0.07
LDLR-206ENST00000557958 GNG2P59768 71 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 RPS27AP62979 156 aaKnown RBP14.6□□□□□ -0.07
LDLR-206ENST00000557958 TRAPPC6BQ86SZ2 158 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 FJX1Q86VR8 437 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 TMEM104Q8NE00 496 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 OR5D18Q8NGL1 313 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 SELENOIQ9C0D9 397 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 OR10A4Q9H209 315 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 ELL3Q9HB65 397 aaPredicted RBP14.6□□□□□ -0.07
LDLR-206ENST00000557958 GPN1Q9HCN4 374 aaPredicted RBP14.6□□□□□ -0.07
LDLR-206ENST00000557958 B3GNT2Q9NY97 397 aa14.6□□□□□ -0.07
LDLR-206ENST00000557958 ARPC1BO15143 372 aaKnown RBP14.59□□□□□ -0.07
LDLR-206ENST00000557958 ZNF780AO75290 641 aaPredicted RBP14.59□□□□□ -0.07
LDLR-206ENST00000557958 EDN3P14138 238 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 TBPP20226 339 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 CPT2P23786 658 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 GZMKP49863 264 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 TNK1Q13470 666 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 PNLIPRP3Q17RR3 467 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 RTL6Q6ICC9 239 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 FAAP20Q6NZ36 180 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 MRPL21Q7Z2W9 205 aaKnown RBP14.59□□□□□ -0.07
LDLR-206ENST00000557958 OR51T1Q8NGJ9 327 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 OR8S1Q8NH09 359 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 BCL2L2Q92843 193 aaPredicted RBP14.59□□□□□ -0.07
LDLR-206ENST00000557958 METTL9Q9H1A3 318 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 BANF2Q9H503 90 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 PCDHB16Q9NRJ7 776 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 PLSCR3Q9NRY6 295 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 SCP2D1Q9UJQ7 156 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 ICMTO60725 284 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 TMEM225BP0DP42 221 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 HIST1H1DP16402 221 aaKnown RBP14.59□□□□□ -0.07
LDLR-206ENST00000557958 MGMTP16455 207 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 FUT6P51993 359 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 ATP1B3P54709 279 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 TFAP2EQ6VUC0 442 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 Q8NA96 180 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 MED30Q96HR3 178 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 GPR137Q96N19 417 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 GINS4Q9BRT9 223 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 PLEKHA6Q9Y2H5 1048 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 BOLA1Q9Y3E2 137 aa14.59□□□□□ -0.07
LDLR-206ENST00000557958 ATMQ13315 3056 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 PTPRQQ9UMZ3 2332 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 FAM230AA0A1W2PPH8 454 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 SSNA1O43805 119 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 CSTBP04080 98 aaKnown RBP14.58□□□□□ -0.08
LDLR-206ENST00000557958 CD74P04233 296 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 TPOP07202 933 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 GNB3P16520 340 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 SERPINA2P20848 420 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 CBX5P45973 191 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 MECP2P51608 486 aaKnown RBP14.58□□□□□ -0.08
LDLR-206ENST00000557958 UBE2NP61088 152 aaKnown RBP14.58□□□□□ -0.08
LDLR-206ENST00000557958 ZMYND11Q15326 602 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 HIKESHIQ53FT3 197 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 PLCXD3Q63HM9 321 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 Q6ZT83 130 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 RNF144BQ7Z419 303 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 FAM89BQ8N5H3 189 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 CSNK2A3Q8NEV1 391 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 OR5L1Q8NGL2 311 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 OR6K3Q8NGY3 331 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 CMBLQ96DG6 245 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 POM121L2Q96KW2 1035 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 NICN1Q9BSH3 213 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 BEX2Q9BXY8 128 aa14.58□□□□□ -0.08
LDLR-206ENST00000557958 DISC1C4P0D8 188 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms