RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 C12orf49Q9H741 205 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 ZNF224Q9NZL3 707 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 CLCF1Q9UBD9 225 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 A8MV72 311 aaPredicted RBP14.64□□□□□ -0.07
LDLR-206ENST00000557958 RAB27BO00194 218 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 PEX14O75381 377 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 CYB5AP00167 134 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 CD79AP11912 226 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 UBE2V2Q15819 145 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 CLVS2Q5SYC1 327 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 ZBTB37Q5TC79 503 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 SFRP4Q6FHJ7 346 aaPredicted RBP14.64□□□□□ -0.07
LDLR-206ENST00000557958 FAM180AQ6UWF9 173 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 Q6ZTK2 550 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 CHST4Q8NCG5 386 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 OR56B1Q8NGI3 324 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 OR10R2Q8NGX6 335 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 AQP3Q92482 292 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 TMEM246Q9BRR3 403 aa14.64□□□□□ -0.07
LDLR-206ENST00000557958 GMDSO60547 372 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 CDC14BO60729 498 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 CRTAPO75718 401 aaPredicted RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 HLA-HP01893 362 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 CRYABP02511 175 aaKnown RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 GUCA2AQ02747 115 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 TGFBR3Q03167 851 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 CISD2Q8N5K1 135 aaKnown RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 TMEM229BQ8NBD8 167 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 CPEB3Q8NE35 698 aaKnown RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 TNFAIP8L1Q8WVP5 186 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 SPSB4Q96A44 273 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 MED28Q9H204 178 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 RANGRFQ9HD47 186 aaPredicted RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 ZNF407Q9C0G0 2248 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 A0A0A6YYJ9 748 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 hCG_38984A0A1B0GV85 526 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 MPIG6BO95866 241 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 STOMP27105 288 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 ERP29P30040 261 aaKnown RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 VEGFCP49767 419 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 RAB1AP62820 205 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 MALLQ13021 153 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 RBMS2Q15434 407 aaKnown RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 MOGAT2Q3SYC2 334 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 ZNF782Q6ZMW2 699 aaPredicted RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 COLCA1Q6ZS62 124 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 ZNF584Q8IVC4 421 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 STEAP2Q8NFT2 490 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 OR1K1Q8NGR3 316 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 NPRL2Q8WTW4 380 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 DACT3Q96B18 629 aaPredicted RBP14.63□□□□□ -0.07
LDLR-206ENST00000557958 TRIB1Q96RU8 372 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 OPA3Q9H6K4 179 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 PRSS50Q9UI38 385 aa14.63□□□□□ -0.07
LDLR-206ENST00000557958 NCOR2Q9Y618 2525 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 OR14I1A6ND48 311 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 TMEM235A6NFC5 223 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 NDUFB6O95139 128 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 SERPINA5P05154 406 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 MELTFP08582 738 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 GSTP1P09211 210 aaKnown RBP14.62□□□□□ -0.07
LDLR-206ENST00000557958 ACKR3P25106 362 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 ARL6IP1Q15041 203 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 OR8B8Q15620 311 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 GSG1Q2KHT4 349 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 ZNF260Q3ZCT1 412 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 CDNFQ49AH0 187 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 STEAP1BQ6NZ63 245 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 RPUSD3Q6P087 351 aaKnown RBP14.62□□□□□ -0.07
LDLR-206ENST00000557958 LHFPL2Q6ZUX7 228 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 CCDC36Q8IYA8 594 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 OR4C16Q8NGL9 310 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 GIMAP1Q8WWP7 306 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 APOBEC3DQ96AK3 386 aaPredicted RBP14.62□□□□□ -0.07
LDLR-206ENST00000557958 C1orf147Q96MC9 270 aaPredicted RBP14.62□□□□□ -0.07
LDLR-206ENST00000557958 GON7Q9BXV9 100 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 PLSCR2Q9NRY7 297 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 NKIRAS2Q9NYR9 191 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 SLC7A11Q9UPY5 501 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 DNAJC13O75165 2243 aa14.62□□□□□ -0.07
LDLR-206ENST00000557958 BOD1L1Q8NFC6 3051 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZNF816-ZNF321PA0A0X1KG74 233 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 C5orf49A4QMS7 147 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 CNOT4O95628 575 aaKnown RBP14.61□□□□□ -0.07
LDLR-206ENST00000557958 NRASP01111 189 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 NAT2P11245 290 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 MTCP1P56278 107 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 FAM3AP98173 230 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 SLC22A6Q4U2R8 563 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 OR2A2Q6IF42 318 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZNF585AQ6P3V2 769 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 FAM214BQ7L5A3 538 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 GABRG1Q8N1C3 465 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 ZFAND1Q8TCF1 268 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 BORCS8Q96FH0 119 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 FYTTD1Q96QD9 318 aaKnown RBP14.61□□□□□ -0.07
LDLR-206ENST00000557958 LPAR5Q9H1C0 372 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 OR51J1Q9H342 316 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 GHITMQ9H3K2 345 aa14.61□□□□□ -0.07
LDLR-206ENST00000557958 NOX3Q9HBY0 568 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms