RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HOXD11P31277 338 aaPredicted RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 PCGF3Q3KNV8 242 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 PABPC1L2AQ5JQF8 200 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 BTN2A1Q7KYR7 527 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 OR56B4Q8NH76 319 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 AKAP1Q92667 903 aaKnown RBP eCLIP14.69□□□□□ -0.06
LDLR-206ENST00000557958 GMPPAQ96IJ6 420 aaPredicted RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 PRDM14Q9GZV8 571 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 SLA2Q9H6Q3 261 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 E9PLN8 166 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 XRCC2O43543 280 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 PATE4P0C8F1 98 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 COX5BP10606 129 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 FAHP16930 419 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 AGTR1P30556 359 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 ARR3P36575 388 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 RIPPLY1Q0D2K3 151 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 SNAI3Q3KNW1 292 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 SFRP5Q5T4F7 317 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 SGK3Q96BR1 496 aa14.68□□□□□ -0.06
LDLR-206ENST00000557958 NCOA6Q14686 2063 aaPredicted RBP14.68□□□□□ -0.06
LDLR-206ENST00000557958 AQP7O14520 342 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 VSIG8P0DPA2 414 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 PTHLHP12272 177 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 RAB25P57735 213 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 FAPQ12884 760 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 GLIPR1L1Q6UWM5 242 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 FGD2Q7Z6J4 655 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 TCTE3Q8IZS6 198 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 NANOS1Q8WY41 292 aaKnown RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 SPSB1Q96BD6 273 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 SARAFQ96BY9 339 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 TRAF4Q9BUZ4 470 aaPredicted RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 CST11Q9H112 138 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 MCUBQ9NWR8 336 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 MRPL15Q9P015 296 aaKnown RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 ZNF107Q9UII5 783 aaPredicted RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 LHX6Q9UPM6 363 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 TRAV6A0A075B6T7 132 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 CHRM2P08172 466 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 H2AFB2P0C5Z0 115 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 PSMB1P20618 241 aaKnown RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 ANOS1P23352 680 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 CCR6P51684 374 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 QRFPP83859 136 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 CNN3Q15417 329 aaKnown RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 NUFIP2Q7Z417 695 aaKnown RBP14.67□□□□□ -0.06
LDLR-206ENST00000557958 NOXA1Q86UR1 476 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 LIX1LQ8IVB5 337 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 GPX8Q8TED1 209 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 S100A13Q99584 98 aa14.67□□□□□ -0.06
LDLR-206ENST00000557958 C5orf63A6NC05 138 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 TMEM14DPA8MWL7 114 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 MPGP29372 298 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 PLP2Q04941 152 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 KISS1Q15726 138 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 C9orf135Q5VTT2 229 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 FBXW9Q5XUX1 488 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 THOC7Q6I9Y2 204 aaKnown RBP14.66□□□□□ -0.06
LDLR-206ENST00000557958 OR10K2Q6IF99 312 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 BIVMQ86UB2 503 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 ACBD4Q8NC06 268 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 SSC4DQ8WTU2 575 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 GAL3ST1Q99999 423 aa14.66□□□□□ -0.06
LDLR-206ENST00000557958 URM1Q9BTM9 101 aaKnown RBP14.66□□□□□ -0.06
LDLR-206ENST00000557958 MYEF2Q9P2K5 600 aaKnown RBP14.66□□□□□ -0.06
LDLR-206ENST00000557958 A0A096LPE4 126 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 IGKV1-9A0A0C4DH69 117 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 A0A1W2PPZ6 126 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 ANKRD34BA5PLL1 514 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 PRAF2O60831 178 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 SS18L1O75177 396 aaPredicted RBP14.65□□□□□ -0.06
LDLR-206ENST00000557958 TGM6O95932 706 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 AKAIN1P0CW23 69 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 GTF2F2P13984 249 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 PRKACBP22694 351 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 ALDH3B1P43353 468 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 RRAS2P62070 204 aaPredicted RBP14.65□□□□□ -0.06
LDLR-206ENST00000557958 UNC119Q13432 240 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 LINC00303Q3SY05 128 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 OR5M9Q8NGP3 310 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 FGFBP3Q8TAT2 258 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 TECTBQ96PL2 329 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 SPACA5Q96QH8 159 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 C1QTNF5Q9BXJ0 243 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 TMEM59Q9BXS4 323 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 C20orf85Q9H1P6 137 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 ING3Q9NXR8 418 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 C7orf66A4D0T2 115 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 PTGFRP43088 359 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 OR3A4PP47883 348 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 OR3A2P47893 321 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 TAS2R19P59542 299 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 HGFACQ04756 655 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 C6orf183Q5T699 404 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 PAQR4Q8N4S7 273 aaPredicted RBP14.65□□□□□ -0.06
LDLR-206ENST00000557958 OR2AE1Q8NHA4 323 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 GRPEL2Q8TAA5 225 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 SEH1LQ96EE3 360 aa14.65□□□□□ -0.06
LDLR-206ENST00000557958 DMRTB1Q96MA1 342 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 448.8 ms