RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 V9GYS6 101 aa14.73□□□□□ -0.05
LDLR-206ENST00000557958 PIEZO1Q92508 2521 aa14.73□□□□□ -0.05
LDLR-206ENST00000557958 PHF3Q92576 2039 aaKnown RBP14.72□□□□□ -0.05
LDLR-206ENST00000557958 SLC22A20A6NK97 555 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 LDLRAD4O15165 306 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 PRSS3P35030 304 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 BTCP35070 178 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 AWAT2Q6E213 333 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 PLXDC2Q6UX71 529 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 DNM1P46Q6ZS02 220 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 Q6ZSR3 168 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 RBMXL3Q8N7X1 1067 aaKnown RBP14.72□□□□□ -0.05
LDLR-206ENST00000557958 OR4D6Q8NGJ1 314 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 LILRB4Q8NHJ6 448 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ACACAQ13085 2346 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 CIB4A0PJX0 185 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ANKRD20A5PA0PJZ0 165 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 SULT1C2O00338 296 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ZNHIT1O43257 154 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ALX3O95076 343 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 IGHG3P01860 377 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 DBHP09172 617 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 CSF1P09603 554 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 UBBP0CG47 229 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ACTBP60709 375 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ACTG1P63261 375 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 PSG4Q00888 419 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 PLA2G7Q13093 441 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 CDK10Q15131 360 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 RSPO1Q2MKA7 263 aaPredicted RBP14.72□□□□□ -0.05
LDLR-206ENST00000557958 MTFR2Q6P444 385 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 UTS2BQ765I0 119 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ZNF627Q7L945 461 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.72□□□□□ -0.05
LDLR-206ENST00000557958 SKA3Q8IX90 412 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 SLC7A6Q92536 515 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 CPNE2Q96FN4 548 aaPredicted RBP14.72□□□□□ -0.05
LDLR-206ENST00000557958 SCPEP1Q9HB40 452 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 FBLN5Q9UBX5 448 aa14.72□□□□□ -0.05
LDLR-206ENST00000557958 H7C417 338 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 WISP2O76076 250 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 IGHV3-9P01782 118 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 MT-ND4P03905 459 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 TCRBP04435 133 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 FAM87AP0C7U9 286 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 GIFP27352 417 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 RAG2P55895 527 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 ARF1P84077 181 aaKnown RBP14.71□□□□□ -0.05
LDLR-206ENST00000557958 PMPCAQ10713 525 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 KRTAP27-1Q3LI81 207 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 TBRG1Q3YBR2 411 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 PLEKHN1Q494U1 663 aaPredicted RBP14.71□□□□□ -0.05
LDLR-206ENST00000557958 OR2W3Q7Z3T1 314 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 NAA40Q86UY6 237 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 GLCCI1Q86VQ1 547 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 ASCC1Q8N9N2 400 aaKnown RBP14.71□□□□□ -0.05
LDLR-206ENST00000557958 AKR7LQ8NHP1 331 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 GCDHQ92947 438 aaPredicted RBP14.71□□□□□ -0.05
LDLR-206ENST00000557958 FAM46BQ96A09 425 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 LYZL4Q96KX0 146 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 GPER1Q99527 375 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 CHST5Q9GZS9 411 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 WNT5BQ9H1J7 359 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 KCNK15Q9H427 330 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 GLRX2Q9NS18 164 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 NUDT15Q9NV35 164 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 SPRR3Q9UBC9 169 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 KLK11Q9UBX7 282 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 MTFP1Q9UDX5 166 aa14.71□□□□□ -0.05
LDLR-206ENST00000557958 LCATP04180 440 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 OLFML2AQ68BL7 652 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 Q6ZS92 163 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 DPPA2Q7Z7J5 298 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 ANGPTL5Q86XS5 388 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 OR5AS1Q8N127 324 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 SEMA6DQ8NFY4 1073 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 TAAR6Q96RI8 345 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 HRASLSQ9HDD0 168 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 PIGLQ9Y2B2 252 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 MRPS28Q9Y2Q9 187 aaKnown RBP14.7□□□□□ -0.06
LDLR-206ENST00000557958 RHBDD3Q9Y3P4 386 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 ALG5Q9Y673 324 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 CEP295Q9C0D2 2601 aa14.7□□□□□ -0.06
LDLR-206ENST00000557958 KDM4BO94953 1096 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 GSK3AP49840 483 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 MRPS15P82914 257 aaKnown RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 P4HA3Q7Z4N8 544 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 ZNF101Q8IZC7 436 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 KCNG3Q8TAE7 436 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 REEP6Q96HR9 211 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 RNF170Q96K19 258 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 NKX3-1Q99801 234 aaPredicted RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 NUDT16L1Q9BRJ7 211 aaKnown RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 SOX7Q9BT81 388 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 GHRLQ9UBU3 117 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 MGAQ8IWI9 3026 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 A0A0B4J293 547 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 LPLP06858 475 aa14.69□□□□□ -0.06
LDLR-206ENST00000557958 MMP7P09237 267 aaPredicted RBP14.69□□□□□ -0.06
LDLR-206ENST00000557958 PRF1P14222 555 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms