RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SPOCK1Q08629 439 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 DYRK1AQ13627 763 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 IGFL2Q6UWQ7 119 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 MCEMP1Q8IX19 187 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 IZUMO1Q8IYV9 350 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 OR1M1Q8NGA1 313 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 EXTL1Q92935 676 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 UQCC2Q9BRT2 126 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 MMP28Q9H239 520 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 SLCO5A1Q9H2Y9 848 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 COPZ2Q9P299 210 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 DKK4Q9UBT3 224 aa14.8□□□□□ -0.04
LDLR-206ENST00000557958 TRAV17A0A0B4J275 112 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 A0A0U1RQV5 110 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 FAM172BPA6NC97 362 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 ZNF724A8MTY0 619 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 K7ENP7 123 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 M0R135 149 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 LANCL1O43813 399 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 ORC5O43913 435 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 CD3GP09693 182 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 CXADRP78310 365 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 GPR176Q14439 515 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 SF3B4Q15427 424 aaKnown RBP eCLIP14.79□□□□□ -0.047e-10■■■■□ 24.5
LDLR-206ENST00000557958 CEACAM16Q2WEN9 425 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 C2orf76Q3KRA6 126 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 C1orf100Q5SVJ3 147 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 INO80CQ6PI98 192 aaPredicted RBP14.79□□□□□ -0.04
LDLR-206ENST00000557958 SLC22A24Q8N4F4 322 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 OR1J2Q8NGS2 313 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 CREB3L1Q96BA8 519 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 ZNF799Q96GE5 643 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 GPR35Q9HC97 309 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 GPR84Q9NQS5 396 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 SSUH2Q9Y2M2 353 aa14.79□□□□□ -0.04
LDLR-206ENST00000557958 RBMX2Q9Y388 322 aaKnown RBP14.79□□□□□ -0.04
LDLR-206ENST00000557958 A0A1B0GTI1 187 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 MEIOCA2RUB1 952 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 F5H5K5 113 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 K7EM74 188 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 SLC2A1P11166 492 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 SLC6A1P30531 599 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 OTX1P32242 354 aaPredicted RBP14.78□□□□□ -0.04
LDLR-206ENST00000557958 TAS2R20P59543 309 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 ATAD3CQ5T2N8 411 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 ZNF813Q6ZN06 617 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 ADGRE4PQ86SQ3 457 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 OR52H1Q8NGJ2 320 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 OR51A2Q8NGJ7 313 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 CAPSLQ8WWF8 208 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 PTX4Q96A99 478 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 FBXO17Q96EF6 278 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 BCO1Q9HAY6 547 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 NLKQ9UBE8 527 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 TIMM10BQ9Y5J6 103 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 SPTBN4Q9H254 2564 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 TRGV5A0A0B4J1U4 118 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 MKRN2OSH3BPM6 223 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 PDGFAP04085 211 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 ITGB2P05107 769 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 B4GALT1P15291 398 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 NTF4P34130 210 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 GDNFP39905 211 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 PTH2RP49190 550 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 TMPRSS3P57727 454 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 SLC36A2Q495M3 483 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 DRAM2Q6UX65 266 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 CDH26Q8IXH8 852 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 ZNF837Q96EG3 531 aaPredicted RBP14.78□□□□□ -0.04
LDLR-206ENST00000557958 ADAT3Q96EY9 351 aaPredicted RBP14.78□□□□□ -0.04
LDLR-206ENST00000557958 OR10A2Q9H208 303 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 TP63Q9H3D4 680 aaPredicted RBP14.78□□□□□ -0.04
LDLR-206ENST00000557958 DPAGT1Q9H3H5 408 aa14.78□□□□□ -0.04
LDLR-206ENST00000557958 METTL17Q9H7H0 456 aaPredicted RBP14.78□□□□□ -0.04
LDLR-206ENST00000557958 URB1O60287 2271 aaKnown RBP14.77□□□□□ -0.04
LDLR-206ENST00000557958 A0A0A6YYH2 397 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 GGT3PA6NGU5 568 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 A6NJ64 397 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 LMX1BO60663 402 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 MTRF1O75570 445 aaKnown RBP14.77□□□□□ -0.05
LDLR-206ENST00000557958 CTAG2O75638 210 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 NKX2-5P52952 324 aaPredicted RBP14.77□□□□□ -0.05
LDLR-206ENST00000557958 TBR1Q16650 682 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 GFOD2Q3B7J2 385 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 RNASE12Q5GAN4 147 aaKnown RBP14.77□□□□□ -0.05
LDLR-206ENST00000557958 RNFT1Q5M7Z0 435 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 SLC16A14Q7RTX9 510 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 PRSS45Q7RTY3 260 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 DEDD2Q8WXF8 326 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 SLC25A28Q96A46 364 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 FAM71F1Q96KD3 344 aaPredicted RBP14.77□□□□□ -0.05
LDLR-206ENST00000557958 MARVELD1Q9BSK0 173 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 ZDHHC11Q9H8X9 412 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 LUZP4Q9P127 313 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 CGGBP1Q9UFW8 167 aaPredicted RBP14.77□□□□□ -0.05
LDLR-206ENST00000557958 LAMA5O15230 3695 aa14.77□□□□□ -0.05
LDLR-206ENST00000557958 TMEM272A0A1B0GTI8 110 aa14.76□□□□□ -0.05
LDLR-206ENST00000557958 NAP1L6A6NFF2 107 aa14.76□□□□□ -0.05
LDLR-206ENST00000557958 ZNF587BE7ETH6 402 aa14.76□□□□□ -0.05
LDLR-206ENST00000557958 YES1P07947 543 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms