Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 RPS29P31-201ENST00000446147 164 ntBASIC3.62□□□□□ -1.83
SHHQ15465 VN1R48P-201ENST00000448149 1036 ntBASIC3.62□□□□□ -1.83
SHHQ15465 RN7SL594P-201ENST00000470590 287 ntBASIC3.62□□□□□ -1.83
SHHQ15465 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
SHHQ15465 AC109458.1-201ENST00000508858 316 ntBASIC3.62□□□□□ -1.83
SHHQ15465 MTND2P31-201ENST00000512602 616 ntBASIC3.62□□□□□ -1.83
SHHQ15465 AC008885.1-201ENST00000514930 301 ntBASIC3.62□□□□□ -1.83
SHHQ15465 SNORA48.9-201ENST00000516419 162 ntBASIC3.62□□□□□ -1.83
SHHQ15465 PSMA2P1-201ENST00000526365 646 ntBASIC3.62□□□□□ -1.83
SHHQ15465 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHHQ15465 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC3.62□□□□□ -1.83
SHHQ15465 VN1R79P-201ENST00000593540 513 ntBASIC3.62□□□□□ -1.83
SHHQ15465 AC073657.2-201ENST00000605661 303 ntBASIC3.62□□□□□ -1.83
SHHQ15465 HMGB1P50-201ENST00000605814 607 ntBASIC3.62□□□□□ -1.83
SHHQ15465 AC017076.1-201ENST00000607613 578 ntBASIC3.62□□□□□ -1.83
SHHQ15465 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.62□□□□□ -1.83
SHHQ15465 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.62□□□□□ -1.83
SHHQ15465 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC3.62□□□□□ -1.83
SHHQ15465 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHHQ15465 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
SHHQ15465 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
SHHQ15465 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.62□□□□□ -1.83
SHHQ15465 AL049555.1-201ENST00000562834 1933 ntBASIC3.62□□□□□ -1.83
SHHQ15465 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHHQ15465 AC116096.1-201ENST00000566804 2314 ntBASIC3.61□□□□□ -1.83
SHHQ15465 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
SHHQ15465 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHHQ15465 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHHQ15465 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SHHQ15465 MTND4P22-201ENST00000413116 1169 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC048351.1-201ENST00000420064 602 ntBASIC3.61□□□□□ -1.83
SHHQ15465 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 AC017099.1-201ENST00000448261 1028 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 AC005912.1-201ENST00000495392 255 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC3.61□□□□□ -1.83
SHHQ15465 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.61□□□□□ -1.83
SHHQ15465 HIGD1AP1-201ENST00000550979 275 ntBASIC3.61□□□□□ -1.83
SHHQ15465 GTF3AP2-201ENST00000557014 266 ntBASIC3.61□□□□□ -1.83
SHHQ15465 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.61□□□□□ -1.83
SHHQ15465 MIR4716-201ENST00000579628 84 ntBASIC3.61□□□□□ -1.83
SHHQ15465 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.61□□□□□ -1.83
SHHQ15465 AC015911.5-201ENST00000587076 451 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.61□□□□□ -1.83
SHHQ15465 AL133247.2-201ENST00000603236 482 ntBASIC3.61□□□□□ -1.83
SHHQ15465 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.61□□□□□ -1.83
SHHQ15465 AC007423.1-201ENST00000605009 627 ntBASIC3.61□□□□□ -1.83
SHHQ15465 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHHQ15465 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.61□□□□□ -1.83
SHHQ15465 ZNF826P-207ENST00000622273 1910 ntBASIC3.61□□□□□ -1.83
SHHQ15465 MFSD8-233ENST00000641482 4860 ntBASIC3.61□□□□□ -1.83
SHHQ15465 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
SHHQ15465 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
SHHQ15465 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SHHQ15465 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
SHHQ15465 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 AC018555.1-201ENST00000567548 1980 ntBASIC3.6□□□□□ -1.83
SHHQ15465 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.6□□□□□ -1.83
SHHQ15465 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SHHQ15465 SEC63P1-201ENST00000425785 1258 ntBASIC3.6□□□□□ -1.83
SHHQ15465 FTH1P1-201ENST00000437933 532 ntBASIC3.6□□□□□ -1.83
SHHQ15465 ARL5AP3-201ENST00000439327 386 ntBASIC3.6□□□□□ -1.83
SHHQ15465 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.6□□□□□ -1.83
SHHQ15465 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.6□□□□□ -1.83
SHHQ15465 EXTL2P1-201ENST00000446218 416 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL645939.1-201ENST00000453429 797 ntBASIC3.6□□□□□ -1.83
SHHQ15465 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL049829.1-201ENST00000465411 156 ntBASIC3.6□□□□□ -1.83
SHHQ15465 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.6□□□□□ -1.83
SHHQ15465 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHHQ15465 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.6□□□□□ -1.83
SHHQ15465 AC010374.2-201ENST00000512933 535 ntBASIC3.6□□□□□ -1.83
SHHQ15465 RNU6-347P-201ENST00000516658 105 ntBASIC3.6□□□□□ -1.83
SHHQ15465 RNU6-362P-201ENST00000516736 90 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.6□□□□□ -1.83
SHHQ15465 SMARCE1P4-201ENST00000523647 241 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL049874.4-201ENST00000557593 255 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL360157.1-201ENST00000565962 87 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.6□□□□□ -1.83
SHHQ15465 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.6□□□□□ -1.83
SHHQ15465 AC020914.4-201ENST00000597690 277 ntBASIC3.6□□□□□ -1.83
SHHQ15465 PSMA6P4-201ENST00000603247 718 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL136370.1-201ENST00000608166 691 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.6□□□□□ -1.83
SHHQ15465 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.6□□□□□ -1.83
SHHQ15465 AP003485.2-201ENST00000623636 610 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AC103798.2-201ENST00000624292 632 ntBASIC3.6□□□□□ -1.83
SHHQ15465 AC091905.1-201ENST00000624400 311 ntBASIC3.6□□□□□ -1.83
SHHQ15465 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SHHQ15465 FAM35DP-201ENST00000323387 2712 ntBASIC3.6□□□□□ -1.83
SHHQ15465 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms