Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 RPS20P1-201ENST00000434853 354 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC096638.2-201ENST00000434965 711 ntBASIC3.7□□□□□ -1.82
SHHQ15465 TPTE2P1-204ENST00000435256 593 ntBASIC3.7□□□□□ -1.82
SHHQ15465 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 NDUFS5P3-201ENST00000450668 321 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC098824.1-201ENST00000453565 980 ntBASIC3.7□□□□□ -1.82
SHHQ15465 METTL15P1-201ENST00000481421 1045 ntBASIC3.7□□□□□ -1.82
SHHQ15465 RPL7P38-201ENST00000488396 739 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC092045.1-201ENST00000495716 1231 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC3.7□□□□□ -1.82
SHHQ15465 EIF4A2P3-201ENST00000525903 1055 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.7□□□□□ -1.82
SHHQ15465 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC068446.3-201ENST00000555285 382 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.7□□□□□ -1.82
SHHQ15465 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.7□□□□□ -1.82
SHHQ15465 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.7□□□□□ -1.82
SHHQ15465 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.7□□□□□ -1.82
SHHQ15465 AC006539.2-201ENST00000601729 572 ntBASIC3.7□□□□□ -1.82
SHHQ15465 AC127502.3-201ENST00000636170 1206 ntBASIC3.7□□□□□ -1.82
SHHQ15465 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
SHHQ15465 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SHHQ15465 IPO8P1-201ENST00000455509 3109 ntBASIC3.7□□□□□ -1.82
SHHQ15465 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.7□□□□□ -1.82
SHHQ15465 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SHHQ15465 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SHHQ15465 RN7SKP44-201ENST00000363602 316 ntBASIC3.69□□□□□ -1.82
SHHQ15465 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 HLFP1-201ENST00000402375 499 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC007899.1-201ENST00000412776 775 ntBASIC3.69□□□□□ -1.82
SHHQ15465 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC3.69□□□□□ -1.82
SHHQ15465 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.69□□□□□ -1.82
SHHQ15465 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 AC010627.1-201ENST00000503819 1294 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.69□□□□□ -1.82
SHHQ15465 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.69□□□□□ -1.82
SHHQ15465 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 RFPL1S-203ENST00000539579 330 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC091515.1-201ENST00000548110 679 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.69□□□□□ -1.82
SHHQ15465 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 MIR4644-201ENST00000579929 84 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 AL390838.2-201ENST00000602394 274 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AL049844.2-201ENST00000604280 628 ntBASIC3.69□□□□□ -1.82
SHHQ15465 BNIP3P10-201ENST00000605360 577 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC128687.2-201ENST00000609657 566 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC009464.1-201ENST00000615731 469 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC006213.4-201ENST00000616184 634 ntBASIC3.69□□□□□ -1.82
SHHQ15465 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.69□□□□□ -1.82
SHHQ15465 AC145207.9-201ENST00000623802 325 ntBASIC3.69□□□□□ -1.82
SHHQ15465 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.69□□□□□ -1.82
SHHQ15465 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
SHHQ15465 Z73965.1-201ENST00000623412 2297 ntBASIC3.69□□□□□ -1.82
SHHQ15465 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.69□□□□□ -1.82
SHHQ15465 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SHHQ15465 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SHHQ15465 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SHHQ15465 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHHQ15465 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
SHHQ15465 AC093908.1-201ENST00000623125 8092 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.68□□□□□ -1.82
SHHQ15465 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SHHQ15465 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SHHQ15465 AMD1P2-201ENST00000412936 992 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.68□□□□□ -1.82
SHHQ15465 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.68□□□□□ -1.82
SHHQ15465 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.68□□□□□ -1.82
SHHQ15465 YWHAEP5-201ENST00000431545 765 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.68□□□□□ -1.82
SHHQ15465 MTCYBP29-201ENST00000436327 1006 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.68□□□□□ -1.82
SHHQ15465 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC3.68□□□□□ -1.82
SHHQ15465 AC021205.1-201ENST00000468797 348 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.68□□□□□ -1.82
SHHQ15465 AC109925.1-201ENST00000478069 331 ntBASIC3.68□□□□□ -1.82
SHHQ15465 SEC11B-201ENST00000518383 499 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC022784.5-201ENST00000522241 437 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.68□□□□□ -1.82
SHHQ15465 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SHHQ15465 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.68□□□□□ -1.82
SHHQ15465 MTATP6P25-201ENST00000574491 261 ntBASIC3.68□□□□□ -1.82
SHHQ15465 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.68□□□□□ -1.82
SHHQ15465 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.68□□□□□ -1.82
SHHQ15465 AC087565.3-202ENST00000642085 1603 ntBASIC3.68□□□□□ -1.82
SHHQ15465 LINC02471-203ENST00000641941 4752 ntBASIC3.68□□□□□ -1.82
SHHQ15465 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms