Protein–RNA interactions for Protein: Q15465

SHH, Sonic hedgehog protein, humanhuman

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHHQ15465 AC093716.1-201ENST00000435923 377 ntBASIC3.75□□□□□ -1.81
SHHQ15465 HLA-N-201ENST00000437516 135 ntBASIC3.75□□□□□ -1.81
SHHQ15465 RPL32P28-201ENST00000443577 397 ntBASIC3.75□□□□□ -1.81
SHHQ15465 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.75□□□□□ -1.81
SHHQ15465 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.75□□□□□ -1.81
SHHQ15465 FCF1P8-201ENST00000510322 597 ntBASIC3.75□□□□□ -1.81
SHHQ15465 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.75□□□□□ -1.81
SHHQ15465 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 SUMO2P20-201ENST00000520803 283 ntBASIC3.75□□□□□ -1.81
SHHQ15465 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.75□□□□□ -1.81
SHHQ15465 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC3.75□□□□□ -1.81
SHHQ15465 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.75□□□□□ -1.81
SHHQ15465 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.75□□□□□ -1.81
SHHQ15465 CYP4A43P-201ENST00000568156 121 ntBASIC3.75□□□□□ -1.81
SHHQ15465 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.75□□□□□ -1.81
SHHQ15465 ATP5A1P2-202ENST00000616464 443 ntBASIC3.75□□□□□ -1.81
SHHQ15465 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SHHQ15465 UBE3AP2-201ENST00000429033 2259 ntBASIC3.75□□□□□ -1.81
SHHQ15465 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.75□□□□□ -1.81
SHHQ15465 CEP170P1-201ENST00000502249 4587 ntBASIC3.75□□□□□ -1.81
SHHQ15465 ZNF90P1-201ENST00000480493 1951 ntBASIC3.74□□□□□ -1.81
SHHQ15465 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
SHHQ15465 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SHHQ15465 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SHHQ15465 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
SHHQ15465 OR5H2-201ENST00000355273 945 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
SHHQ15465 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
SHHQ15465 RNU6-1251P-201ENST00000364502 107 ntBASIC3.74□□□□□ -1.81
SHHQ15465 RN7SKP53-201ENST00000411337 315 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AC063979.1-201ENST00000415539 377 ntBASIC3.74□□□□□ -1.81
SHHQ15465 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.74□□□□□ -1.81
SHHQ15465 MTCYBP7-201ENST00000419540 1134 ntBASIC3.74□□□□□ -1.81
SHHQ15465 SDCBPP2-201ENST00000424643 885 ntBASIC3.74□□□□□ -1.81
SHHQ15465 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.74□□□□□ -1.81
SHHQ15465 OR5AW1P-201ENST00000426334 1006 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC3.74□□□□□ -1.81
SHHQ15465 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 RPL31P53-201ENST00000457065 348 ntBASIC3.74□□□□□ -1.81
SHHQ15465 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 AC106872.2-201ENST00000494303 480 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC3.74□□□□□ -1.81
SHHQ15465 OR5M7P-201ENST00000526140 972 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC3.74□□□□□ -1.81
SHHQ15465 AC018552.3-201ENST00000567416 561 ntBASIC3.74□□□□□ -1.81
SHHQ15465 AC093732.2-201ENST00000607950 274 ntBASIC3.74□□□□□ -1.81
SHHQ15465 NF1P10-201ENST00000613227 742 ntBASIC3.74□□□□□ -1.81
SHHQ15465 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
SHHQ15465 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.74□□□□□ -1.81
SHHQ15465 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 OTUD4P1-201ENST00000237841 3067 ntBASIC3.73□□□□□ -1.81
SHHQ15465 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.73□□□□□ -1.81
SHHQ15465 RNA5SP235-201ENST00000365411 114 ntBASIC3.73□□□□□ -1.81
SHHQ15465 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 RN7SKP111-201ENST00000410349 271 ntBASIC3.73□□□□□ -1.81
SHHQ15465 RPL35AP12-201ENST00000425362 338 ntBASIC3.73□□□□□ -1.81
SHHQ15465 RWDD4P2-201ENST00000426392 563 ntBASIC3.73□□□□□ -1.81
SHHQ15465 NANOGP6-201ENST00000429190 847 ntBASIC3.73□□□□□ -1.81
SHHQ15465 MAPRE1P3-201ENST00000435438 796 ntBASIC3.73□□□□□ -1.81
SHHQ15465 ELOCP10-201ENST00000440624 327 ntBASIC3.73□□□□□ -1.81
SHHQ15465 AC140076.1-201ENST00000449897 361 ntBASIC3.73□□□□□ -1.81
SHHQ15465 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 RPL7P48-201ENST00000461513 746 ntBASIC3.73□□□□□ -1.81
SHHQ15465 RWDD4P1-201ENST00000488019 565 ntBASIC3.73□□□□□ -1.81
SHHQ15465 TRBV12-2-201ENST00000489763 344 ntBASIC3.73□□□□□ -1.81
SHHQ15465 AL035404.1-201ENST00000497982 568 ntBASIC3.73□□□□□ -1.81
SHHQ15465 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 AC026801.2-201ENST00000515352 425 ntBASIC3.73□□□□□ -1.81
SHHQ15465 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
SHHQ15465 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.73□□□□□ -1.81
SHHQ15465 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.73□□□□□ -1.81
SHHQ15465 ELOCP34-201ENST00000604436 327 ntBASIC3.73□□□□□ -1.81
SHHQ15465 AC067852.7-201ENST00000623270 535 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms