Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.62■□□□□ 0.57
PTX4Q96A99 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.62■□□□□ 0.57
PTX4Q96A99 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTX4Q96A99 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.62■□□□□ 0.57
PTX4Q96A99 AC005229.4-201ENST00000610085 2198 ntBASIC18.61■□□□□ 0.57
PTX4Q96A99 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.61■□□□□ 0.57
PTX4Q96A99 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.61■□□□□ 0.57
PTX4Q96A99 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.61■□□□□ 0.57
PTX4Q96A99 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PTX4Q96A99 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.61■□□□□ 0.57
PTX4Q96A99 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.61■□□□□ 0.57
PTX4Q96A99 AC137630.3-201ENST00000607245 391 ntBASIC18.61■□□□□ 0.57
PTX4Q96A99 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.61■□□□□ 0.57
PTX4Q96A99 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PTX4Q96A99 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC18.6■□□□□ 0.57
PTX4Q96A99 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
PTX4Q96A99 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PTX4Q96A99 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PTX4Q96A99 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.59■□□□□ 0.57
PTX4Q96A99 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.59■□□□□ 0.57
PTX4Q96A99 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PTX4Q96A99 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.59■□□□□ 0.57
PTX4Q96A99 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.59■□□□□ 0.57
PTX4Q96A99 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PTX4Q96A99 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.58■□□□□ 0.57
PTX4Q96A99 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTX4Q96A99 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PTX4Q96A99 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
PTX4Q96A99 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.58■□□□□ 0.56
PTX4Q96A99 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.58■□□□□ 0.56
PTX4Q96A99 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.58■□□□□ 0.56
PTX4Q96A99 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.58■□□□□ 0.56
PTX4Q96A99 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PTX4Q96A99 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
PTX4Q96A99 Z98882.1-201ENST00000622160 2253 ntBASIC18.57■□□□□ 0.56
PTX4Q96A99 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
PTX4Q96A99 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PTX4Q96A99 AC004687.1-201ENST00000579003 1625 ntBASIC18.56■□□□□ 0.56
PTX4Q96A99 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTX4Q96A99 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.56■□□□□ 0.56
PTX4Q96A99 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
PTX4Q96A99 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PTX4Q96A99 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTX4Q96A99 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC18.56■□□□□ 0.56
PTX4Q96A99 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTX4Q96A99 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC18.56■□□□□ 0.56
PTX4Q96A99 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.56■□□□□ 0.56
PTX4Q96A99 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PTX4Q96A99 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTX4Q96A99 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.55■□□□□ 0.56
PTX4Q96A99 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTX4Q96A99 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.55■□□□□ 0.56
PTX4Q96A99 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTX4Q96A99 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
PTX4Q96A99 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
PTX4Q96A99 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
PTX4Q96A99 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.55■□□□□ 0.56
PTX4Q96A99 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms