Protein–RNA interactions for Protein: Q96A99

PTX4, Pentraxin-4, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTX4Q96A99 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTX4Q96A99 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTX4Q96A99 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.69■□□□□ 0.58
PTX4Q96A99 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PTX4Q96A99 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTX4Q96A99 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTX4Q96A99 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTX4Q96A99 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.68■□□□□ 0.58
PTX4Q96A99 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.68■□□□□ 0.58
PTX4Q96A99 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.68■□□□□ 0.58
PTX4Q96A99 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.68■□□□□ 0.58
PTX4Q96A99 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 AC005703.6-201ENST00000623265 1329 ntBASIC18.68■□□□□ 0.58
PTX4Q96A99 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTX4Q96A99 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PTX4Q96A99 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.67■□□□□ 0.58
PTX4Q96A99 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
PTX4Q96A99 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.67■□□□□ 0.58
PTX4Q96A99 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.67■□□□□ 0.58
PTX4Q96A99 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.67■□□□□ 0.58
PTX4Q96A99 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.67■□□□□ 0.58
PTX4Q96A99 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.67■□□□□ 0.58
PTX4Q96A99 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTX4Q96A99 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTX4Q96A99 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.66■□□□□ 0.58
PTX4Q96A99 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.66■□□□□ 0.58
PTX4Q96A99 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.66■□□□□ 0.58
PTX4Q96A99 MIR6722-201ENST00000617286 78 ntBASIC18.66■□□□□ 0.58
PTX4Q96A99 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.66■□□□□ 0.58
PTX4Q96A99 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.66■□□□□ 0.58
PTX4Q96A99 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC18.66■□□□□ 0.58
PTX4Q96A99 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTX4Q96A99 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.65■□□□□ 0.58
PTX4Q96A99 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 MIR4508-201ENST00000584178 70 ntBASIC18.65■□□□□ 0.58
PTX4Q96A99 AC010980.1-201ENST00000587192 1142 ntBASIC18.65■□□□□ 0.58
PTX4Q96A99 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PTX4Q96A99 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTX4Q96A99 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.65■□□□□ 0.58
PTX4Q96A99 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTX4Q96A99 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PTX4Q96A99 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PTX4Q96A99 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
PTX4Q96A99 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.64■□□□□ 0.57
PTX4Q96A99 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.64■□□□□ 0.57
PTX4Q96A99 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.64■□□□□ 0.57
PTX4Q96A99 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PTX4Q96A99 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC18.64■□□□□ 0.57
PTX4Q96A99 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTX4Q96A99 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PTX4Q96A99 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 AC012354.3-201ENST00000623734 483 ntBASIC18.63■□□□□ 0.57
PTX4Q96A99 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.63■□□□□ 0.57
PTX4Q96A99 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTX4Q96A99 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PTX4Q96A99 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms